Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000076A_C07 KMC000076A_c07
(1485 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB83948.1| CIG1 [Nicotiana tabacum] 372 e-101
dbj|BAA11682.1| proline oxidase precursor [Arabidopsis thaliana] 347 2e-94
ref|NP_189701.2| hypothetical protein; protein id: At3g30775.1, ... 345 1e-93
gb|AAL16138.1|AF428306_1 At3g30775/MIF6.16 [Arabidopsis thaliana] 345 1e-93
sp|P92983|PROD_ARATH Proline oxidase, mitochondrial precursor (O... 345 1e-93
>dbj|BAB83948.1| CIG1 [Nicotiana tabacum]
Length = 493
Score = 372 bits (954), Expect = e-101
Identities = 177/287 (61%), Positives = 234/287 (80%)
Frame = -1
Query: 1152 TIISLSNVKKIVVSFVIVKITAICPMSLLERLSDLLRWQQKDPSFNLPWKQDSLPIFAKC 973
T S ++ VSFV+VKITAIC LL+R+SDLLRW+ K+PSFNLPWKQ SLP+F+
Sbjct: 174 TAESTKSLPSSSVSFVVVKITAICTPKLLKRMSDLLRWEHKNPSFNLPWKQKSLPLFSDS 233
Query: 972 SPLYHTRKRPEPLTREEESDLELANQRFLELCQKCVQANIPLLVDAEHTAVQPAIDYFTY 793
SP YHT ++PEPLT EEE DL+LA++R + +C+KC++ ++ LL+DAE TA+QPAIDYF Y
Sbjct: 234 SPFYHTPQKPEPLTVEEEHDLQLAHERLMTICKKCLELDVDLLIDAEDTAIQPAIDYFAY 293
Query: 792 SSSIVHNKGENPIVFGTIQTYLKDAKERLLLATEAAEKMGVPMGFKLVRGAYMSSERSLA 613
S++I ++K ++P++FGTIQ YLKD+KER+++A +AAEKMGVPMGFKLVRGAYMSSER LA
Sbjct: 294 SAAIKYHKDDDPMIFGTIQAYLKDSKERMVIAKKAAEKMGVPMGFKLVRGAYMSSERELA 353
Query: 612 SSLGYASPIHNTIQDTHKCFNDCSSYLLEKIANGPGGVVLATHNVESGKLAAAKAHELGI 433
S LG SPIH++I+ TH CFN C+ ++L++I+NG G VVLATHN++SGKLAA+KA +LGI
Sbjct: 354 SRLGVQSPIHDSIEQTHDCFNSCAEFMLDEISNGSGAVVLATHNIDSGKLAASKAIDLGI 413
Query: 432 GKVNHTLEFAQLHGMSEALSFALSHATGFRLASTCHFGPVETVMPYL 292
K + L+FAQL+GM+E LSF L +A GF+++ FGPVE VMPYL
Sbjct: 414 RKDSQKLQFAQLYGMAEGLSFGLRNA-GFQVSKYLPFGPVEQVMPYL 459
Score = 37.7 bits (86), Expect = 0.48
Identities = 27/58 (46%), Positives = 31/58 (52%), Gaps = 3/58 (5%)
Frame = -3
Query: 352 GFQVSKYMPLWTCRDSYALPPLEGLRRIE---GCWLHQGFDRLLMRKELGRRLQAAIS 188
GFQVSKY+P +P L +RR E G FDR LMRKEL RR + A S
Sbjct: 440 GFQVSKYLPFGPVEQ--VMPYL--IRRAEENRGLLSTSAFDRQLMRKELTRRFKVATS 493
>dbj|BAA11682.1| proline oxidase precursor [Arabidopsis thaliana]
Length = 499
Score = 347 bits (891), Expect = 2e-94
Identities = 173/276 (62%), Positives = 214/276 (76%), Gaps = 2/276 (0%)
Frame = -1
Query: 1113 SFVIVKITAICPMSLLERLSDLLRWQQKDPSFNLPWKQDSLPIFAKCSPLYHTRKRPEPL 934
S V+VKITAICP+SLL+R+SDLLRW+ K P+F L WK S P+F++ SPLYHT PEPL
Sbjct: 191 SSVVVKITAICPISLLKRVSDLLRWEYKSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPL 250
Query: 933 TREEESDLELANQRFLELCQKCVQANIPLLVDAEHTAVQPAIDYFTYSSSIVHNKG-ENP 757
T EEE +LE A+ R E+C+KC ++N+PLL+DAE T +QPAIDY YSS+I+ N + P
Sbjct: 251 TAEEERELEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRP 310
Query: 756 IVFGTIQTYLKDAKERLLLATEAAEKMGVPMGFKLVRGAYMSSERSLASSLGYASPIHNT 577
IV+ TIQ YL+DA ERL LA + AEK VPMGFKLVRGAYMSSERSLA SLG SP+H+T
Sbjct: 311 IVYNTIQAYLRDAGERLHLAVQNAEKENVPMGFKLVRGAYMSSERSLADSLGCKSPVHDT 370
Query: 576 IQDTHKCFNDCSSYLLEKIANGPG-GVVLATHNVESGKLAAAKAHELGIGKVNHTLEFAQ 400
IQDTH C+NDC ++L+EK +NG G GVVLATHN +SG+LA+ KA +LGI K N +EFAQ
Sbjct: 371 IQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLASRKASDLGIDKQNGKIEFAQ 430
Query: 399 LHGMSEALSFALSHATGFRLASTCHFGPVETVMPYL 292
L+GMS+ALSF L A GF ++ FGPV T +PYL
Sbjct: 431 LYGMSDALSFGLKRA-GFNVSKYMPFGPVATAIPYL 465
>ref|NP_189701.2| hypothetical protein; protein id: At3g30775.1, supported by cDNA:
gi_16226334, supported by cDNA: gi_1778014, supported by
cDNA: gi_1817543, supported by cDNA: gi_18377848
[Arabidopsis thaliana]
Length = 405
Score = 345 bits (885), Expect = 1e-93
Identities = 172/276 (62%), Positives = 213/276 (76%), Gaps = 2/276 (0%)
Frame = -1
Query: 1113 SFVIVKITAICPMSLLERLSDLLRWQQKDPSFNLPWKQDSLPIFAKCSPLYHTRKRPEPL 934
S V+VKITAICP+SLL+R+SDLLRW+ K P+F L WK S P+F++ SPLYHT PEPL
Sbjct: 97 SSVVVKITAICPISLLKRVSDLLRWEYKSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPL 156
Query: 933 TREEESDLELANQRFLELCQKCVQANIPLLVDAEHTAVQPAIDYFTYSSSIVHNKG-ENP 757
T EEE +LE A+ R E+C+KC ++N+PLL+DAE T +QPAIDY YSS+I+ N + P
Sbjct: 157 TAEEERELEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRP 216
Query: 756 IVFGTIQTYLKDAKERLLLATEAAEKMGVPMGFKLVRGAYMSSERSLASSLGYASPIHNT 577
IV+ TIQ YL+DA ERL LA + AEK VPMGFKLVRGAYMSSE SLA SLG SP+H+T
Sbjct: 217 IVYNTIQAYLRDAGERLHLAVQNAEKENVPMGFKLVRGAYMSSEASLADSLGCKSPVHDT 276
Query: 576 IQDTHKCFNDCSSYLLEKIANGPG-GVVLATHNVESGKLAAAKAHELGIGKVNHTLEFAQ 400
IQDTH C+NDC ++L+EK +NG G GVVLATHN +SG+LA+ KA +LGI K N +EFAQ
Sbjct: 277 IQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLASRKASDLGIDKQNGKIEFAQ 336
Query: 399 LHGMSEALSFALSHATGFRLASTCHFGPVETVMPYL 292
L+GMS+ALSF L A GF ++ FGPV T +PYL
Sbjct: 337 LYGMSDALSFGLKRA-GFNVSKYMPFGPVATAIPYL 371
>gb|AAL16138.1|AF428306_1 At3g30775/MIF6.16 [Arabidopsis thaliana]
Length = 499
Score = 345 bits (885), Expect = 1e-93
Identities = 172/276 (62%), Positives = 213/276 (76%), Gaps = 2/276 (0%)
Frame = -1
Query: 1113 SFVIVKITAICPMSLLERLSDLLRWQQKDPSFNLPWKQDSLPIFAKCSPLYHTRKRPEPL 934
S V+VKITAICP+SLL+R+SDLLRW+ K P+F L WK S P+F++ SPLYHT PEPL
Sbjct: 191 SSVVVKITAICPISLLKRVSDLLRWEYKSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPL 250
Query: 933 TREEESDLELANQRFLELCQKCVQANIPLLVDAEHTAVQPAIDYFTYSSSIVHNKG-ENP 757
T EEE +LE A+ R E+C+KC ++N+PLL+DAE T +QPAIDY YSS+I+ N + P
Sbjct: 251 TAEEERELEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRP 310
Query: 756 IVFGTIQTYLKDAKERLLLATEAAEKMGVPMGFKLVRGAYMSSERSLASSLGYASPIHNT 577
IV+ TIQ YL+DA ERL LA + AEK VPMGFKLVRGAYMSSE SLA SLG SP+H+T
Sbjct: 311 IVYNTIQAYLRDAGERLHLAVQNAEKENVPMGFKLVRGAYMSSEASLADSLGCKSPVHDT 370
Query: 576 IQDTHKCFNDCSSYLLEKIANGPG-GVVLATHNVESGKLAAAKAHELGIGKVNHTLEFAQ 400
IQDTH C+NDC ++L+EK +NG G GVVLATHN +SG+LA+ KA +LGI K N +EFAQ
Sbjct: 371 IQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLASRKASDLGIDKQNGRIEFAQ 430
Query: 399 LHGMSEALSFALSHATGFRLASTCHFGPVETVMPYL 292
L+GMS+ALSF L A GF ++ FGPV T +PYL
Sbjct: 431 LYGMSDALSFGLKRA-GFNVSKYMPFGPVATAIPYL 465
>sp|P92983|PROD_ARATH Proline oxidase, mitochondrial precursor (Osmotic stress-induced
proline dehydrogenase)
Length = 499
Score = 345 bits (885), Expect = 1e-93
Identities = 172/276 (62%), Positives = 213/276 (76%), Gaps = 2/276 (0%)
Frame = -1
Query: 1113 SFVIVKITAICPMSLLERLSDLLRWQQKDPSFNLPWKQDSLPIFAKCSPLYHTRKRPEPL 934
S V+VKITAICP+SLL+R+SDLLRW+ K P+F L WK S P+F++ SPLYHT PEPL
Sbjct: 191 SSVVVKITAICPISLLKRVSDLLRWEYKSPNFKLSWKLKSFPVFSESSPLYHTNSEPEPL 250
Query: 933 TREEESDLELANQRFLELCQKCVQANIPLLVDAEHTAVQPAIDYFTYSSSIVHNKG-ENP 757
T EEE +LE A+ R E+C+KC ++N+PLL+DAE T +QPAIDY YSS+I+ N + P
Sbjct: 251 TAEEERELEAAHGRIQEICRKCQESNVPLLIDAEDTILQPAIDYMAYSSAIMFNADKDRP 310
Query: 756 IVFGTIQTYLKDAKERLLLATEAAEKMGVPMGFKLVRGAYMSSERSLASSLGYASPIHNT 577
IV+ TIQ YL+DA ERL LA + AEK VPMGFKLVRGAYMSSE SLA SLG SP+H+T
Sbjct: 311 IVYNTIQAYLRDAGERLHLAVQNAEKENVPMGFKLVRGAYMSSEASLADSLGCKSPVHDT 370
Query: 576 IQDTHKCFNDCSSYLLEKIANGPG-GVVLATHNVESGKLAAAKAHELGIGKVNHTLEFAQ 400
IQDTH C+NDC ++L+EK +NG G GVVLATHN +SG+LA+ KA +LGI K N +EFAQ
Sbjct: 371 IQDTHSCYNDCMTFLMEKASNGSGFGVVLATHNADSGRLASRKASDLGIDKQNGKIEFAQ 430
Query: 399 LHGMSEALSFALSHATGFRLASTCHFGPVETVMPYL 292
L+GMS+ALSF L A GF ++ FGPV T +PYL
Sbjct: 431 LYGMSDALSFGLKRA-GFNVSKYMPFGPVATAIPYL 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,347,830,245
Number of Sequences: 1393205
Number of extensions: 31887841
Number of successful extensions: 136262
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 83014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120341
length of database: 448,689,247
effective HSP length: 127
effective length of database: 271,752,212
effective search space used: 99733061804
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
