Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000073A_C02 KMC000073A_c02
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA77218.1| LON protease homologue [Lithospermum erythrorhizon] 114 9e-25
gb|AAO00734.1| Lon protease homolog 1 precursor [Arabidopsis tha... 112 3e-24
ref|NP_568675.1| Lon protease homolog 1 precursor; protein id: A... 112 3e-24
gb|AAM95459.1| Lon protease [Oryza sativa (indica cultivar-group)] 110 2e-23
gb|AAK62365.1|AF385580_1 Lon protease [Dichanthelium lanuginosum] 107 1e-22
>dbj|BAA77218.1| LON protease homologue [Lithospermum erythrorhizon]
Length = 222
Score = 114 bits (285), Expect = 9e-25
Identities = 52/67 (77%), Positives = 63/67 (93%)
Frame = -3
Query: 581 GGVKDKILTAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRVEDVLEHAFDGGCP 402
GG+KDK+L AHR GIKRVILPERNLKDL EVP++VL++LEI+LAKR+EDVLE AF+GGCP
Sbjct: 156 GGIKDKVLAAHRCGIKRVILPERNLKDLAEVPAAVLSSLEIILAKRMEDVLEQAFEGGCP 215
Query: 401 WRQNSKL 381
WRQ+S+L
Sbjct: 216 WRQHSRL 222
>gb|AAO00734.1| Lon protease homolog 1 precursor [Arabidopsis thaliana]
Length = 557
Score = 112 bits (281), Expect = 3e-24
Identities = 53/68 (77%), Positives = 64/68 (93%), Gaps = 1/68 (1%)
Frame = -3
Query: 581 GGVKDKILTAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRVEDVLEHAFDGGCP 402
GG+KDKIL AHRYGIKRVILP+RN KDLVEVP++VL++LE++LAKR+EDVLE+AF+GGCP
Sbjct: 490 GGIKDKILAAHRYGIKRVILPQRNSKDLVEVPAAVLSSLEVILAKRMEDVLENAFEGGCP 549
Query: 401 WRQN-SKL 381
WR N SKL
Sbjct: 550 WRNNYSKL 557
>ref|NP_568675.1| Lon protease homolog 1 precursor; protein id: At5g47040.1
[Arabidopsis thaliana] gi|3914002|sp|O64948|LON1_ARATH
Lon protease homolog 1, mitochondrial precursor
gi|2935279|gb|AAC05085.1| Lon protease [Arabidopsis
thaliana] gi|9759446|dbj|BAB10243.1| mitochondrial Lon
protease homolog 1 precursor [Arabidopsis thaliana]
Length = 888
Score = 112 bits (281), Expect = 3e-24
Identities = 53/68 (77%), Positives = 64/68 (93%), Gaps = 1/68 (1%)
Frame = -3
Query: 581 GGVKDKILTAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRVEDVLEHAFDGGCP 402
GG+KDKIL AHRYGIKRVILP+RN KDLVEVP++VL++LE++LAKR+EDVLE+AF+GGCP
Sbjct: 821 GGIKDKILAAHRYGIKRVILPQRNSKDLVEVPAAVLSSLEVILAKRMEDVLENAFEGGCP 880
Query: 401 WRQN-SKL 381
WR N SKL
Sbjct: 881 WRNNYSKL 888
>gb|AAM95459.1| Lon protease [Oryza sativa (indica cultivar-group)]
Length = 884
Score = 110 bits (274), Expect = 2e-23
Identities = 50/67 (74%), Positives = 60/67 (88%)
Frame = -3
Query: 581 GGVKDKILTAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRVEDVLEHAFDGGCP 402
GGVKDK+L AHRYGIKRVILPERN+KDL EVP+ +L+ LEILL KR+E+VL+HAF+GGCP
Sbjct: 818 GGVKDKVLAAHRYGIKRVILPERNMKDLAEVPAPILSGLEILLVKRIEEVLDHAFEGGCP 877
Query: 401 WRQNSKL 381
R +SKL
Sbjct: 878 LRPHSKL 884
>gb|AAK62365.1|AF385580_1 Lon protease [Dichanthelium lanuginosum]
Length = 884
Score = 107 bits (267), Expect = 1e-22
Identities = 50/67 (74%), Positives = 58/67 (85%)
Frame = -3
Query: 581 GGVKDKILTAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRVEDVLEHAFDGGCP 402
GGVKDK+L AHRYGIKRVILPERNLKDL EVPS +L+ +EILL KR+E+VL+HAF+GGC
Sbjct: 818 GGVKDKVLAAHRYGIKRVILPERNLKDLTEVPSPILSGMEILLVKRIEEVLDHAFEGGCL 877
Query: 401 WRQNSKL 381
R SKL
Sbjct: 878 LRSRSKL 884
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,414,110
Number of Sequences: 1393205
Number of extensions: 11194322
Number of successful extensions: 26990
Number of sequences better than 10.0: 210
Number of HSP's better than 10.0 without gapping: 26265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26978
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
