Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000072A_C01 KMC000072A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177538.1| unknown protein; protein id: At1g73980.1, suppo... 73 2e-12
ref|NP_173944.1| hypothetical protein; protein id: At1g26190.1, ... 53 2e-06
gb|AAL87159.1|AF480496_13 putative uridine kinase [Oryza sativa ... 48 9e-05
ref|XP_241497.1| hypothetical protein XP_241497 [Rattus norvegicus] 32 5.3
ref|NP_473039.2| hypothetical protein [Plasmodium falciparum 3D7... 31 9.0
>ref|NP_177538.1| unknown protein; protein id: At1g73980.1, supported by cDNA:
gi_18087605 [Arabidopsis thaliana]
gi|25406309|pir||E96767 unknown protein F2P9.15
[imported] - Arabidopsis thaliana
gi|12325149|gb|AAG52525.1|AC016662_19 unknown protein;
49651-52886 [Arabidopsis thaliana]
gi|18087606|gb|AAL58933.1|AF462846_1 At1g73980/F2P9_15
[Arabidopsis thaliana] gi|27363254|gb|AAO11546.1|
At1g73980/F2P9_15 [Arabidopsis thaliana]
Length = 643
Score = 73.2 bits (178), Expect = 2e-12
Identities = 36/71 (50%), Positives = 51/71 (71%), Gaps = 4/71 (5%)
Frame = -1
Query: 517 VLLVARGQRQLIHQLDTLSHLLHEYFGERSRQDRTEQRRMG----EIESIAIPVVLTLAI 350
V+LVARGQRQ++HQ+DTLS+LL EY GE++R +R + R +ES +P++L LAI
Sbjct: 572 VVLVARGQRQIMHQMDTLSNLLREYVGEKTRIERLDSSRTNSTTQNLESSTVPILLGLAI 631
Query: 349 GAVGVFLFKGL 317
G VG+F + L
Sbjct: 632 GCVGIFAYSRL 642
>ref|NP_173944.1| hypothetical protein; protein id: At1g26190.1, supported by cDNA:
gi_20259436 [Arabidopsis thaliana]
gi|25511665|pir||B86388 76.0K hypothetical protein
F28B23.13 - Arabidopsis thaliana
gi|12321172|gb|AAG50674.1|AC079829_7 hypothetical
protein [Arabidopsis thaliana]
gi|20259437|gb|AAM14039.1| unknown protein [Arabidopsis
thaliana] gi|21436169|gb|AAM51372.1| unknown protein
[Arabidopsis thaliana]
Length = 674
Score = 53.1 bits (126), Expect = 2e-06
Identities = 29/74 (39%), Positives = 43/74 (57%), Gaps = 12/74 (16%)
Frame = -1
Query: 508 VARGQRQLIHQLDTLSHLLHEYFGERSRQDRTEQRRMG------------EIESIAIPVV 365
++RGQRQ++HQLD L +L+ E ERSR RT G +ES +P+V
Sbjct: 594 ISRGQRQVMHQLDNLCNLMRESSAERSRLARTGSSNSGNRGRSSKSSFLSNVESNKLPLV 653
Query: 364 LTLAIGAVGVFLFK 323
LT+AI ++G+ + K
Sbjct: 654 LTVAICSIGIIVIK 667
>gb|AAL87159.1|AF480496_13 putative uridine kinase [Oryza sativa (japonica cultivar-group)]
Length = 646
Score = 47.8 bits (112), Expect = 9e-05
Identities = 29/66 (43%), Positives = 42/66 (62%), Gaps = 1/66 (1%)
Frame = -1
Query: 508 VARGQRQLIHQLDTLSHLLHEYFGERSRQDRTEQRRMGEIE-SIAIPVVLTLAIGAVGVF 332
++RGQRQ+IHQLD L+ LLHE+ +RQ RR G +E ++I ++ L IG G
Sbjct: 581 ISRGQRQVIHQLDNLTSLLHEHLA-LTRQGNA-VRRNGILEMDMSICPLIALTIGGFGYL 638
Query: 331 LFKGLS 314
+FK L+
Sbjct: 639 VFKSLN 644
>ref|XP_241497.1| hypothetical protein XP_241497 [Rattus norvegicus]
Length = 214
Score = 32.0 bits (71), Expect = 5.3
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -2
Query: 459 IFCMNTLEKGHGRTEQSRDEWVKLNPLPSL 370
I CM LEKGH + EWV NPL +L
Sbjct: 68 IKCMQDLEKGHWKEAHHPCEWVSGNPLSAL 97
>ref|NP_473039.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503393|gb|AAC71900.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4091
Score = 31.2 bits (69), Expect = 9.0
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 2 NVTRKTHENKEQIYTED*YSTKKMNYLARTKKYRSFVLTVE*KIHSYILIDNFLHYIFRE 181
N+T+K H+N + ED K+ Y+ R K + + + YIL+D F Y +
Sbjct: 787 NITKKNHKNIHMVILED-TLYYKIIYILRKKNINKDTIYITYIEYYYILLDYFCKYFYNN 845
Query: 182 AE 187
+
Sbjct: 846 MD 847
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,931,805
Number of Sequences: 1393205
Number of extensions: 9819150
Number of successful extensions: 31692
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 30893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31685
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
