Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000070A_C01 KMC000070A_c01
(662 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM51838.1|AC105730_12 Unknown protein [Oryza sativa (japonic... 42 0.006
dbj|BAB10415.1| gene_id:K2A18.18~pir||T04699~similar to unknown ... 40 0.021
ref|NP_201411.2| putative protein; protein id: At5g66100.1, supp... 40 0.021
ref|NP_568409.1| putative protein; protein id: At5g21160.1, supp... 36 0.53
pir||T04699 hypothetical protein F4B14.160 - Arabidopsis thalian... 34 2.0
>gb|AAM51838.1|AC105730_12 Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 481
Score = 42.4 bits (98), Expect = 0.006
Identities = 25/56 (44%), Positives = 32/56 (56%), Gaps = 3/56 (5%)
Frame = -1
Query: 656 STVVEVQGDLLRRRNDWMRWLPSAQ---LRADSSSLAPGRSRYANLEADFQTLSVE 498
STVVEVQGD LR+R W WL Q S SL+P S +L + FQ++ +E
Sbjct: 368 STVVEVQGDKLRKRERWEIWLLPKQGYSAGNSSGSLSPVTSNIDSLASQFQSVGLE 423
>dbj|BAB10415.1| gene_id:K2A18.18~pir||T04699~similar to unknown protein
[Arabidopsis thaliana]
Length = 431
Score = 40.4 bits (93), Expect = 0.021
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = -1
Query: 662 RTSTVVEVQGDLLRRRNDWMRWLPSAQLRADSSSLAPGRSRYANLEADFQTLSVEETTND 483
R+S VVE+QG+ LRRR DW ++L + S A G S A+L + +++++ E + +
Sbjct: 372 RSSEVVEIQGETLRRRGDWDKYLLPRE--PSRSGPAAGASNNASLVSQIESMTLSERSRE 429
>ref|NP_201411.2| putative protein; protein id: At5g66100.1, supported by cDNA:
gi_20147194 [Arabidopsis thaliana]
gi|20147195|gb|AAM10313.1| AT5g66100/K2A18_18
[Arabidopsis thaliana] gi|23506195|gb|AAN31109.1|
At5g66100/K2A18_18 [Arabidopsis thaliana]
Length = 453
Score = 40.4 bits (93), Expect = 0.021
Identities = 21/60 (35%), Positives = 36/60 (60%)
Frame = -1
Query: 662 RTSTVVEVQGDLLRRRNDWMRWLPSAQLRADSSSLAPGRSRYANLEADFQTLSVEETTND 483
R+S VVE+QG+ LRRR DW ++L + S A G S A+L + +++++ E + +
Sbjct: 394 RSSEVVEIQGETLRRRGDWDKYLLPRE--PSRSGPAAGASNNASLVSQIESMTLSERSRE 451
>ref|NP_568409.1| putative protein; protein id: At5g21160.1, supported by cDNA:
gi_15450526 [Arabidopsis thaliana]
gi|15450527|gb|AAK96556.1| AT5g21160/T10F18_190
[Arabidopsis thaliana] gi|22655032|gb|AAM98107.1|
At5g21160/T10F18_190 [Arabidopsis thaliana]
gi|29294066|gb|AAO73903.1| proline-rich protein family
[Arabidopsis thaliana]
Length = 826
Score = 35.8 bits (81), Expect = 0.53
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 656 STVVEVQGDLLRRRNDWMRWLPSAQLRADSSSLAPG 549
S VEVQGD +R+R+ W W+P+++ + ++ G
Sbjct: 339 SNSVEVQGDQIRKRDKWSDWIPASKKSTSAETIGDG 374
>pir||T04699 hypothetical protein F4B14.160 - Arabidopsis thaliana
gi|3036793|emb|CAA18483.1| putative protein [Arabidopsis
thaliana] gi|3805855|emb|CAA21475.1| putative protein
[Arabidopsis thaliana] gi|7270541|emb|CAB81498.1|
putative protein [Arabidopsis thaliana]
Length = 472
Score = 33.9 bits (76), Expect = 2.0
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -1
Query: 662 RTSTVVEVQGDLLRRRNDWMRWLPSAQLRADSSSLAPGRSRYANLEAD-FQTLSVEETTN 486
+ S VEVQGD +R+R++W W+ LR + + P A+ A LSV++++
Sbjct: 377 QNSPHVEVQGDFIRKRDNWQNWV----LRRNPTGSGPQSVDRADAVAKRLGNLSVDQSSA 432
Query: 485 DEGPKTFSQSQL 450
D P S SQL
Sbjct: 433 D--PIGGSSSQL 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,889,484
Number of Sequences: 1393205
Number of extensions: 11088674
Number of successful extensions: 31754
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 30483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31740
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
