Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000067A_C01 KMC000067A_c01
(650 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC16511.1| contains ESTs C26549(C12568),AU092341(C12568)~un... 99 5e-20
dbj|BAB02982.1| gb|AAF27150.1~gene_id:MAG2.14~similar to unknown... 52 7e-06
gb|AAF97304.1|AC007843_7 Hypothetical protein [Arabidopsis thali... 51 1e-05
gb|AAF79457.1|AC022492_1 F1L3.1 [Arabidopsis thaliana] 51 1e-05
ref|NP_177384.1| hypothetical protein; protein id: At1g72400.1 [... 40 0.036
>dbj|BAC16511.1| contains ESTs C26549(C12568),AU092341(C12568)~unknown protein [Oryza
sativa (japonica cultivar-group)]
gi|24060025|dbj|BAC21482.1| contains ESTs
C26549(C12568),AU092341(C12568)~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 1366
Score = 99.0 bits (245), Expect = 5e-20
Identities = 48/80 (60%), Positives = 65/80 (81%)
Frame = -3
Query: 648 SSEDLRKSRMGFSHGHPSDDSFNDSELFNEQVQSMQSSIPAPPAHFKLRDDHISGSSIKA 469
SS+D RKSRMG+ + D F D+++F EQ QS++SSIP PPA+F+LR+D ++GSS+KA
Sbjct: 1290 SSDDFRKSRMGYPSAY---DGFVDTDVFAEQDQSLRSSIPNPPANFRLREDQLTGSSLKA 1346
Query: 468 PKSFFSLSTFRSKGSDSKPR 409
P+SFFSLSTFRSKG D++ R
Sbjct: 1347 PRSFFSLSTFRSKGGDARLR 1366
>dbj|BAB02982.1| gb|AAF27150.1~gene_id:MAG2.14~similar to unknown protein [Arabidopsis
thaliana]
Length = 1040
Score = 52.0 bits (123), Expect = 7e-06
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = -3
Query: 648 SSEDLRKSRMGFSHGHPSDDSFNDSELFNE 559
SSEDLRKSRMGF HPS DSFN+SELF E
Sbjct: 990 SSEDLRKSRMGFLQSHPSGDSFNESELFTE 1019
>gb|AAF97304.1|AC007843_7 Hypothetical protein [Arabidopsis thaliana]
Length = 1061
Score = 51.2 bits (121), Expect = 1e-05
Identities = 34/80 (42%), Positives = 43/80 (53%)
Frame = -3
Query: 648 SSEDLRKSRMGFSHGHPSDDSFNDSELFNEQVQSMQSSIPAPPAHFKLRDDHISGSSIKA 469
SS++LRKSRM S S+D + N +Q A FK++D
Sbjct: 998 SSDELRKSRMASSQSQLSEDE----QASNNMIQPHHHQ-----ASFKVKDGDFK------ 1042
Query: 468 PKSFFSLSTFRSKGSDSKPR 409
+SFFSLSTFRSKG+DSKPR
Sbjct: 1043 -RSFFSLSTFRSKGNDSKPR 1061
>gb|AAF79457.1|AC022492_1 F1L3.1 [Arabidopsis thaliana]
Length = 1068
Score = 51.2 bits (121), Expect = 1e-05
Identities = 34/80 (42%), Positives = 43/80 (53%)
Frame = -3
Query: 648 SSEDLRKSRMGFSHGHPSDDSFNDSELFNEQVQSMQSSIPAPPAHFKLRDDHISGSSIKA 469
SS++LRKSRM S S+D + N +Q A FK++D
Sbjct: 1005 SSDELRKSRMASSQSQLSEDE----QASNNMIQPHHHQ-----ASFKVKDGDFK------ 1049
Query: 468 PKSFFSLSTFRSKGSDSKPR 409
+SFFSLSTFRSKG+DSKPR
Sbjct: 1050 -RSFFSLSTFRSKGNDSKPR 1068
>ref|NP_177384.1| hypothetical protein; protein id: At1g72400.1 [Arabidopsis
thaliana] gi|25406175|pir||A96748 hypothetical protein
T10D10.13 [imported] - Arabidopsis thaliana
gi|12325274|gb|AAG52581.1|AC016529_12 hypothetical
protein; 58100-61035 [Arabidopsis thaliana]
Length = 946
Score = 39.7 bits (91), Expect = 0.036
Identities = 21/31 (67%), Positives = 23/31 (73%)
Frame = -3
Query: 648 SSEDLRKSRMGFSHGHPSDDSFNDSELFNEQ 556
SSEDLRKSRMG H S+D FN+SE F EQ
Sbjct: 894 SSEDLRKSRMGSLQNHLSEDGFNESE-FPEQ 923
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,389,903
Number of Sequences: 1393205
Number of extensions: 10734020
Number of successful extensions: 23320
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23312
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
