Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000065A_C01 KMC000065A_c01
(668 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S71146 H+-transporting two-sector ATPase (EC 3.6.3.14) beta... 36 0.41
gb|AAO51812.1| similar to Homo sapiens (Human). Hypothetical pro... 36 0.54
sp|O03070|ATPB_HYPHO ATP synthase beta chain gi|1934716|gb|AAB51... 35 0.92
sp|Q95ZG3|SP97_DICDI Spindle pole body component 97 (Spc97) (DdS... 34 2.0
sp|O03079|ATPB_PTEAQ ATP synthase beta chain 33 2.7
>pir||S71146 H+-transporting two-sector ATPase (EC 3.6.3.14) beta chain -
Anthoceros formosae chloroplast (fragment)
gi|1396041|dbj|BAA07795.1| atpB [Anthoceros formosae]
Length = 492
Score = 36.2 bits (82), Expect = 0.41
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -3
Query: 633 QITGTSNGTYISSYGIHSKMNTPLLHSTTSHEMKAEEETAGHQSAATNISEGTSSAGIET 454
+IT T G+ S ++ P+ T S A T H A T + G ++ GI
Sbjct: 310 RITPTKEGSITSIQAVY----VPVDDLTDS----APATTFAHSDATTVLFRGLAAKGIYL 361
Query: 453 DMKPLDRKFTMSKK--VGDPKVSSTVSLGSNSRYLSLLREQGSVVLELSSDSSSESD 289
+ PLD FTM + VG+ + + + L +E ++ L SD SSE D
Sbjct: 362 VVDPLDSTFTMLQPWIVGEEHYETAQGV---KQTLQRYKELQDIIATLGSDESSEED 415
>gb|AAO51812.1| similar to Homo sapiens (Human). Hypothetical protein FLJ12697
(Fragment) [Dictyostelium discoideum]
Length = 919
Score = 35.8 bits (81), Expect = 0.54
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Frame = -3
Query: 648 NVGXSQITGTSNGTYISSYGIHSKMNTPLLHSTT---SHEMKAEEETAGHQSAATNISEG 478
N I N + + SK+ TP +TT + E+ A+E+ + TNI+
Sbjct: 545 NTNTVSINTIGNKRKLDDEKLTSKITTPTTTTTTITTTPEITADEKQNIKKQKITNITTT 604
Query: 477 TSSAGIETDMKPLDRKFTMSKKVGDPKVSSTVSLGSNSRYLSLLREQ 337
T++ T KP++ T++ PK+ ST + + SL + Q
Sbjct: 605 TTTTTTTTTTKPINNNNTVT---SSPKIESTKKVSPQIKSTSLSQSQ 648
>sp|O03070|ATPB_HYPHO ATP synthase beta chain gi|1934716|gb|AAB51745.1| ATP synthase beta
chain [Hypolepis hostilis]
Length = 208
Score = 35.0 bits (79), Expect = 0.92
Identities = 33/123 (26%), Positives = 52/123 (41%), Gaps = 4/123 (3%)
Frame = -3
Query: 645 VGXSQ--ITGTSNGTYISSYGIHSKMNTPLLHSTTSHEMKAEEETAGHQSAATNISEGTS 472
+G SQ IT T +G+ S ++ + P A T+ H A T +S G +
Sbjct: 42 MGSSQERITSTKDGSITSIQAVYVPADDPT--------DPAPATTSAHLDATTVLSRGLA 93
Query: 471 SAGIETDMKPLDRKFTMSKK--VGDPKVSSTVSLGSNSRYLSLLREQGSVVLELSSDSSS 298
+ GI + PLD TMS+ VG+ + + + L +E ++ L D S
Sbjct: 94 AKGIYPAVDPLDSTSTMSQPWIVGEEHYETAQGV---KQTLQRYKELQDIIAILGLDELS 150
Query: 297 ESD 289
E D
Sbjct: 151 EED 153
>sp|Q95ZG3|SP97_DICDI Spindle pole body component 97 (Spc97) (DdSpc97)
gi|15072754|emb|CAC47949.1| Spc97 protein [Dictyostelium
discoideum]
Length = 1177
Score = 33.9 bits (76), Expect = 2.0
Identities = 19/57 (33%), Positives = 33/57 (57%)
Frame = -3
Query: 648 NVGXSQITGTSNGTYISSYGIHSKMNTPLLHSTTSHEMKAEEETAGHQSAATNISEG 478
N + IT T+N T ++ I++ +NT L+ ST++HE+ + G +S A N + G
Sbjct: 714 NTSSNNITATTN-TSSNNTTINTTVNTTLIQSTSAHEVLKTNKLFGIESLAFNYNVG 769
>sp|O03079|ATPB_PTEAQ ATP synthase beta chain
Length = 495
Score = 33.5 bits (75), Expect = 2.7
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Frame = -3
Query: 645 VGXSQ--ITGTSNGTYISSYGIHSKMNTPLLHSTTSHEMKAEEETAGHQSAATNISEGTS 472
+G SQ IT T +G+ S ++ P T A T+ H A T +S G +
Sbjct: 306 MGSSQERITSTKDGSITSIQAVY----VPADDLTDP----APATTSAHLDATTVLSRGLA 357
Query: 471 SAGIETDMKPLDRKFTMSKK--VGDPKVSSTVSLGSNS-RYLSLLREQGSVVLELSSDSS 301
+ GI + PLD TMS+ VG+ + + S RY +E ++ L D
Sbjct: 358 AKGIYPAVDPLDSTSTMSQPWIVGEEHYETAQGVKQTSQRY----KELQDIIAILGLDEL 413
Query: 300 SESDDS*VA 274
SE D VA
Sbjct: 414 SEEDRQTVA 422
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,251,270
Number of Sequences: 1393205
Number of extensions: 9745874
Number of successful extensions: 26290
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 25001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26226
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
