Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000062A_C01 KMC000062A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG52090.1|AC012680_1 unknown protein, 5' partial; 69506-6793... 54 1e-06
gb|AAF71804.1|AC013430_13 F3F9.21 [Arabidopsis thaliana] 54 1e-06
dbj|BAC42014.1| unknown protein [Arabidopsis thaliana] 50 2e-05
ref|NP_172839.1| hypothetical protein; protein id: At1g13860.1 [... 50 2e-05
gb|AAN46794.1| At2g03480/T4M8.9 [Arabidopsis thaliana] 50 2e-05
>gb|AAG52090.1|AC012680_1 unknown protein, 5' partial; 69506-67937 [Arabidopsis thaliana]
Length = 379
Score = 54.3 bits (129), Expect = 1e-06
Identities = 24/36 (66%), Positives = 29/36 (79%)
Frame = -1
Query: 556 RALTTQLKWDARVIEIESDSDQKLLICQKPLIKRHA 449
R TQLKW+ARVIE+ES S+Q+LLICQKP KR +
Sbjct: 343 RETITQLKWEARVIEVESSSEQRLLICQKPFTKRQS 378
>gb|AAF71804.1|AC013430_13 F3F9.21 [Arabidopsis thaliana]
Length = 767
Score = 54.3 bits (129), Expect = 1e-06
Identities = 24/36 (66%), Positives = 29/36 (79%)
Frame = -1
Query: 556 RALTTQLKWDARVIEIESDSDQKLLICQKPLIKRHA 449
R TQLKW+ARVIE+ES S+Q+LLICQKP KR +
Sbjct: 731 RETITQLKWEARVIEVESSSEQRLLICQKPFTKRQS 766
>dbj|BAC42014.1| unknown protein [Arabidopsis thaliana]
Length = 603
Score = 49.7 bits (117), Expect = 2e-05
Identities = 19/34 (55%), Positives = 29/34 (84%)
Frame = -1
Query: 556 RALTTQLKWDARVIEIESDSDQKLLICQKPLIKR 455
R L +++W+ARVI+I+ SDQ+LL+CQKPL+K+
Sbjct: 570 RTLAARVRWEARVIDIQDGSDQRLLVCQKPLLKK 603
>ref|NP_172839.1| hypothetical protein; protein id: At1g13860.1 [Arabidopsis
thaliana]
Length = 603
Score = 49.7 bits (117), Expect = 2e-05
Identities = 19/34 (55%), Positives = 29/34 (84%)
Frame = -1
Query: 556 RALTTQLKWDARVIEIESDSDQKLLICQKPLIKR 455
R L +++W+ARVI+I+ SDQ+LL+CQKPL+K+
Sbjct: 570 RTLAARVRWEARVIDIQDGSDQRLLVCQKPLLKK 603
>gb|AAN46794.1| At2g03480/T4M8.9 [Arabidopsis thaliana]
Length = 394
Score = 49.7 bits (117), Expect = 2e-05
Identities = 19/36 (52%), Positives = 30/36 (82%)
Frame = -1
Query: 556 RALTTQLKWDARVIEIESDSDQKLLICQKPLIKRHA 449
RAL +++W+ARVI+++ SDQ+LL+CQKP IK ++
Sbjct: 347 RALAARVRWEARVIDLQDGSDQRLLVCQKPFIKNNS 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,252,993
Number of Sequences: 1393205
Number of extensions: 10523616
Number of successful extensions: 26911
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 26018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26904
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
