Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000061A_C04 KMC000061A_c04
(1040 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10214.1| contains similarity to unknown protein~emb|CAB89... 127 4e-28
ref|NP_198805.1| putative protein; protein id: At5g39890.1, supp... 127 4e-28
ref|NP_197016.1| putative protein; protein id: At5g15120.1 [Arab... 101 2e-20
dbj|BAB03364.1| unnamed protein product [Oryza sativa (japonica ... 91 2e-17
gb|AAK96846.1| Unknown protein [Arabidopsis thaliana] gi|1837750... 85 2e-15
>dbj|BAB10214.1| contains similarity to unknown protein~emb|CAB89322.1~gene_id:MYH19.8
[Arabidopsis thaliana]
Length = 270
Score = 127 bits (318), Expect = 4e-28
Identities = 58/85 (68%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = -2
Query: 1036 DGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISIPEEERNGYEW 857
DGGNMHCFTA TACAVLDV+GPPYSD GRHCTYY +YPFS SV+G+ + EEE+ GY W
Sbjct: 186 DGGNMHCFTAKTACAVLDVIGPPYSDPAGRHCTYYFDYPFSSFSVDGVVVAEEEKEGYAW 245
Query: 856 LQEKEQL-EDLEVDGKMYSGPKIHE 785
L+E+E+ EDL V MYSGP I E
Sbjct: 246 LKEREEKPEDLTVTALMYSGPTIKE 270
>ref|NP_198805.1| putative protein; protein id: At5g39890.1, supported by cDNA: 100590.
[Arabidopsis thaliana] gi|21536502|gb|AAM60834.1| unknown
[Arabidopsis thaliana] gi|27808558|gb|AAO24559.1|
At5g39890 [Arabidopsis thaliana]
Length = 276
Score = 127 bits (318), Expect = 4e-28
Identities = 58/85 (68%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
Frame = -2
Query: 1036 DGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISIPEEERNGYEW 857
DGGNMHCFTA TACAVLDV+GPPYSD GRHCTYY +YPFS SV+G+ + EEE+ GY W
Sbjct: 192 DGGNMHCFTAKTACAVLDVIGPPYSDPAGRHCTYYFDYPFSSFSVDGVVVAEEEKEGYAW 251
Query: 856 LQEKEQL-EDLEVDGKMYSGPKIHE 785
L+E+E+ EDL V MYSGP I E
Sbjct: 252 LKEREEKPEDLTVTALMYSGPTIKE 276
>ref|NP_197016.1| putative protein; protein id: At5g15120.1 [Arabidopsis thaliana]
gi|11357884|pir||T49947 hypothetical protein F8M21.10 -
Arabidopsis thaliana gi|7671481|emb|CAB89322.1| putative
protein [Arabidopsis thaliana]
Length = 293
Score = 101 bits (252), Expect = 2e-20
Identities = 48/89 (53%), Positives = 61/89 (67%), Gaps = 4/89 (4%)
Frame = -2
Query: 1039 EDGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISI--PEEERNG 866
EDGGNMH FTA+TACAVLDVLGPPY + EGRHCTY+ +P +S E + EEE+ G
Sbjct: 205 EDGGNMHRFTAITACAVLDVLGPPYCNPEGRHCTYFLEFPLDKLSSEDDDVLSSEEEKEG 264
Query: 865 YEWLQEKEQ--LEDLEVDGKMYSGPKIHE 785
Y WLQE++ + V G +Y GPK+ +
Sbjct: 265 YAWLQERDDNPEDHTNVVGALYRGPKVED 293
>dbj|BAB03364.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 246
Score = 91.3 bits (225), Expect = 2e-17
Identities = 45/83 (54%), Positives = 53/83 (63%)
Frame = -2
Query: 1039 EDGGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEGISIPEEERNGYE 860
EDGGN+HCFTA TACAVLDVLGPPY D GRHC +YN S G S P +GY
Sbjct: 163 EDGGNLHCFTAHTACAVLDVLGPPYDDGSGRHCQHYN--VSSSAPSAGDSKPLPGDDGYA 220
Query: 859 WLQEKEQLEDLEVDGKMYSGPKI 791
WL+E E ++ + G Y GP+I
Sbjct: 221 WLEECEPPDNFHLVGSTYMGPRI 243
>gb|AAK96846.1| Unknown protein [Arabidopsis thaliana] gi|18377500|gb|AAL66916.1|
unknown protein [Arabidopsis thaliana]
Length = 226
Score = 84.7 bits (208), Expect = 2e-15
Identities = 38/83 (45%), Positives = 54/83 (64%), Gaps = 2/83 (2%)
Frame = -2
Query: 1033 GGNMHCFTAVTACAVLDVLGPPYSDYEGRHCTYYNNYPFSDISVEG--ISIPEEERNGYE 860
GGN+HCFTA+T CAVLD+L PPY + GR C+YY +YPFS ++E + E + + Y
Sbjct: 142 GGNLHCFTALTPCAVLDILSPPYKESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYA 201
Query: 859 WLQEKEQLEDLEVDGKMYSGPKI 791
WL + + +DL + Y+GP I
Sbjct: 202 WLVQIDTPDDLHMRPGSYTGPTI 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 860,569,564
Number of Sequences: 1393205
Number of extensions: 18674449
Number of successful extensions: 46506
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 43828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46388
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 61256865594
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
