Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000060A_C01 KMC000060A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG42757.1|AF302666_1 ubiquitin-specific protease 16 [Arabido... 69 6e-11
ref|NP_567705.1| ubiquitin-specific protease 16 (UBP16), putativ... 69 6e-11
ref|NP_013018.1| Suppressor of mutant AC40 subunit of RNA polyme... 38 5e-05
gb|AAA35091.1| selected as a weak suppressor of a mutant of the ... 38 5e-05
ref|NP_267008.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lact... 37 2e-04
>gb|AAG42757.1|AF302666_1 ubiquitin-specific protease 16 [Arabidopsis thaliana]
Length = 1008
Score = 68.9 bits (167), Expect = 6e-11
Identities = 43/81 (53%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGD-SGRGWSSLWRNSDSDTSS 487
EDS+SDSSSLF SNSDE SCST DSTS+DDF+D+IFGD GR S + +SS
Sbjct: 920 EDSASDSSSLFDSNSDECSCST----DSTSMDDFADFIFGDHQGRAHGQSETPSPTSSSS 975
Query: 486 TSSSPLN----LQTFAPVGYG 436
+SS P L +P YG
Sbjct: 976 SSSPPFTRRSPLSRSSPETYG 996
>ref|NP_567705.1| ubiquitin-specific protease 16 (UBP16), putative; protein id:
At4g24560.1, supported by cDNA: gi_11993476 [Arabidopsis
thaliana] gi|7485969|pir||T05578 hypothetical protein
F22K18.240 - Arabidopsis thaliana
gi|4220534|emb|CAA23007.1| putative protein [Arabidopsis
thaliana] gi|7269306|emb|CAB79366.1| putative protein
[Arabidopsis thaliana]
Length = 1008
Score = 68.9 bits (167), Expect = 6e-11
Identities = 43/81 (53%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGD-SGRGWSSLWRNSDSDTSS 487
EDS+SDSSSLF SNSDE SCST DSTS+DDF+D+IFGD GR S + +SS
Sbjct: 920 EDSASDSSSLFDSNSDECSCST----DSTSMDDFADFIFGDHQGRAHGQSETPSPTSSSS 975
Query: 486 TSSSPLN----LQTFAPVGYG 436
+SS P L +P YG
Sbjct: 976 SSSPPFTRRSPLSRSSPETYG 996
>ref|NP_013018.1| Suppressor of mutant AC40 subunit of RNA polymerase I and III (high
serine); Srp40p [Saccharomyces cerevisiae]
gi|548976|sp|P32583|SR40_YEAST SUPPRESSOR PROTEIN SRP40
gi|539364|pir||S38170 SRP40 protein - yeast
(Saccharomyces cerevisiae) gi|450552|emb|CAA51946.1| ORF
YKR412 [Saccharomyces cerevisiae]
gi|486581|emb|CAA82171.1| ORF YKR092c [Saccharomyces
cerevisiae]
Length = 406
Score = 37.7 bits (86), Expect = 0.14
Identities = 28/62 (45%), Positives = 33/62 (53%)
Frame = -3
Query: 660 DSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTS 481
DS SDS S S+S S + S DS+S D SD DS SS +SDSD+ S S
Sbjct: 186 DSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSD---SDSSSSSSS--SSSDSDSDSDS 240
Query: 480 SS 475
SS
Sbjct: 241 SS 242
Score = 37.0 bits (84), Expect(2) = 0.004
Identities = 26/61 (42%), Positives = 32/61 (51%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS+SSS SS+S E +ES DS+S S DS S +S SD+SS S
Sbjct: 152 SSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSD 211
Query: 477 S 475
S
Sbjct: 212 S 212
Score = 37.0 bits (84), Expect = 0.24
Identities = 25/64 (39%), Positives = 31/64 (48%)
Frame = -3
Query: 660 DSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTS 481
DS S SSS SS+ + + S DS+ D S S SS +SDSD+ S S
Sbjct: 220 DSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGS 279
Query: 480 SSPL 469
SS L
Sbjct: 280 SSEL 283
Score = 37.0 bits (84), Expect(2) = 7e-05
Identities = 31/65 (47%), Positives = 38/65 (57%), Gaps = 3/65 (4%)
Frame = -3
Query: 660 DSSSDSSSLFSSNSDEGSCS---TESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTS 490
+S SDSSS SS+SD S S ++S S+S D SD DS SS SDSD+S
Sbjct: 172 ESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSD---SDSSSSDSS----SDSDSS 224
Query: 489 STSSS 475
S+SSS
Sbjct: 225 SSSSS 229
Score = 36.2 bits (82), Expect = 0.41
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 6/75 (8%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDD------FSDYIFGDSGRGWSSLWRNSD 502
+ SSSDSSS S+S S S++S DS S D DS S+ +SD
Sbjct: 211 DSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSD 270
Query: 501 SDTSSTSSSPLNLQT 457
SD+ S S S L+T
Sbjct: 271 SDSDSDSGSSSELET 285
Score = 36.2 bits (82), Expect(2) = 0.002
Identities = 26/61 (42%), Positives = 32/61 (51%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS SS+S S S+ S S+S D SD +S SS +S S + S SS
Sbjct: 36 SSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESS 95
Query: 477 S 475
S
Sbjct: 96 S 96
Score = 35.8 bits (81), Expect(2) = 0.020
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS SS+S S S ES S+S S DS SS +S S +SS+SS
Sbjct: 31 SSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSS 90
Score = 35.8 bits (81), Expect = 0.53
Identities = 31/65 (47%), Positives = 34/65 (51%), Gaps = 4/65 (6%)
Frame = -3
Query: 660 DSSSDS---SSLFSSNSDEGSCSTESRRDSTS-IDDFSDYIFGDSGRGWSSLWRNSDSDT 493
DSSSDS SS SS+SD S S+ S DS S D SD S SS +SD T
Sbjct: 205 DSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDEST 264
Query: 492 SSTSS 478
SS SS
Sbjct: 265 SSDSS 269
Score = 35.0 bits (79), Expect = 0.91
Identities = 25/61 (40%), Positives = 31/61 (49%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS SS+S S S+ S S+S S DS S +S S +SS+SS
Sbjct: 28 SSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSS 87
Query: 477 S 475
S
Sbjct: 88 S 88
Score = 34.7 bits (78), Expect = 1.2
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSID--DFSDY-IFGDSGRGWSSLWRNSDSDTSS 487
SSS SSS SS+S E S S+ S S+S D D SD S SS +SDS++SS
Sbjct: 37 SSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESSS 96
Query: 486 TSSS 475
S S
Sbjct: 97 ESDS 100
Score = 34.7 bits (78), Expect(2) = 5e-05
Identities = 25/60 (41%), Positives = 31/60 (51%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSSDSS SS+S+ S S+ S S+S D DS SS +S SD SS+ S
Sbjct: 63 SSSDSSD--SSDSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSES 120
Score = 34.7 bits (78), Expect = 1.2
Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -3
Query: 660 DSSSDS-SSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDT--S 490
DS SDS SS SS+SD S S S DS+S D S S S +SDSD+ S
Sbjct: 190 DSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGS 249
Query: 489 STSSS 475
S SSS
Sbjct: 250 SDSSS 254
Score = 34.3 bits (77), Expect = 1.5
Identities = 24/71 (33%), Positives = 31/71 (42%)
Frame = -3
Query: 660 DSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTS 481
DSSSDS S S +SD S S S +STS D DSG + + +D S
Sbjct: 239 DSSSDSDS--SGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEATADESKAE 296
Query: 480 SSPLNLQTFAP 448
+P + P
Sbjct: 297 ETPASSNESTP 307
Score = 34.3 bits (77), Expect = 1.5
Identities = 25/63 (39%), Positives = 30/63 (46%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSST 484
E SSS SSS SS+SD S S+S S DS S +S S +SS+
Sbjct: 51 ESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSS 110
Query: 483 SSS 475
SSS
Sbjct: 111 SSS 113
Score = 33.9 bits (76), Expect(2) = 5e-05
Identities = 31/101 (30%), Positives = 43/101 (41%)
Frame = -1
Query: 452 PLSDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVS 273
P S S S ++ +GS S+ D S S D E DS S
Sbjct: 148 PESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQ----------S 197
Query: 272 SSSSSSSSSSRETDSFLKLRTDHFNDVNTNLSCRKSRKRTD 150
SSSSSSS SS ++DS +D +D +++ S S +D
Sbjct: 198 SSSSSSSDSSSDSDS---SSSDSSSDSDSSSSSSSSSSDSD 235
Score = 33.9 bits (76), Expect = 2.0
Identities = 28/64 (43%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSD-YIFGDSGRGWSSLWRNSDSDTSS 487
E SSS SSS S S S S S S+S D SD S SS +SDSD+SS
Sbjct: 155 ESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSS 214
Query: 486 TSSS 475
+ SS
Sbjct: 215 SDSS 218
Score = 33.5 bits (75), Expect = 2.6
Identities = 26/61 (42%), Positives = 33/61 (53%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSSDSSS S+S + S ++S S+S SD S SS +SDS +SS SS
Sbjct: 202 SSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSS--GSSDSSSSSDSS 259
Query: 477 S 475
S
Sbjct: 260 S 260
Score = 33.1 bits (74), Expect = 3.5
Identities = 23/61 (37%), Positives = 29/61 (46%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS S+S S S+ S DS+ D S SS +S+S + S SS
Sbjct: 42 SSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESSSESDSS 101
Query: 477 S 475
S
Sbjct: 102 S 102
Score = 32.0 bits (71), Expect(2) = 1.5
Identities = 24/67 (35%), Positives = 29/67 (42%)
Frame = -1
Query: 428 DSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVSSSSSSSSS 249
DS S ++ + S SE D S S SS DS SSSSSSSS
Sbjct: 174 DSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSD 233
Query: 248 SSRETDS 228
S ++DS
Sbjct: 234 SDSDSDS 240
Score = 31.2 bits (69), Expect(2) = 7e-05
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -1
Query: 389 TGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVSSSSSSSSSSSRETDSFLKLRT 210
+ SSS D S D + G DSS S +SS SS S S ++ S +L T
Sbjct: 226 SSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELET 285
Score = 30.4 bits (67), Expect(2) = 0.69
Identities = 27/85 (31%), Positives = 34/85 (39%), Gaps = 22/85 (25%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTES----------------------RRDSTSIDDFSDYI 550
+ SSS SSS SS+SDE S +ES + + S
Sbjct: 99 DSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKAKTEPESSSSSESSS 158
Query: 549 FGDSGRGWSSLWRNSDSDTSSTSSS 475
G S S SDSD+SS+SSS
Sbjct: 159 SGSSSSSESESGSESDSDSSSSSSS 183
Score = 26.9 bits (58), Expect(2) = 0.002
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 446 SDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVE-RKGVGDSSLHRKLDSGRVSS 270
SD S S ++ + S D R+RE D E K + + S SS
Sbjct: 98 SDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKAKTEPESSSSSESS 157
Query: 269 SSSSSSSSSRETDS 228
SS SSSSS E+ S
Sbjct: 158 SSGSSSSSESESGS 171
Score = 25.0 bits (53), Expect(2) = 0.004
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -1
Query: 383 SSSEIDGPSHRSR---EMDVERKGVGDSSLHRKLDSGRVSSSSSSSSSSSRETDS 228
SSS+ D S S + D + DS SG SSSSS SSS T S
Sbjct: 217 SSSDSDSSSSSSSSSSDSDSDSDSSSDSD-----SSGSSDSSSSSDSSSDESTSS 266
Score = 23.9 bits (50), Expect(2) = 0.020
Identities = 18/76 (23%), Positives = 29/76 (37%)
Frame = -1
Query: 455 SPLSDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRV 276
S SD + ++G + SSS+ S + +R D+ ++ +
Sbjct: 87 SSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKAKT 146
Query: 275 SSSSSSSSSSSRETDS 228
SSSSS SS S
Sbjct: 147 EPESSSSSESSSSGSS 162
Score = 23.9 bits (50), Expect(2) = 0.69
Identities = 21/80 (26%), Positives = 28/80 (34%)
Frame = -1
Query: 389 TGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVSSSSSSSSSSSRETDSFLKLRT 210
+ SSS S S + DSS S S S SSS S S +
Sbjct: 197 SSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSS 256
Query: 209 DHFNDVNTNLSCRKSRKRTD 150
D +D +T+ S +D
Sbjct: 257 DSSSDESTSSDSSDSDSDSD 276
Score = 21.2 bits (43), Expect(2) = 1.5
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS S + + S S+S SD +S + R +SD
Sbjct: 81 SSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKE 140
Query: 477 S 475
+
Sbjct: 141 T 141
>gb|AAA35091.1| selected as a weak suppressor of a mutant of the subunit AC40 of
DNA dependant RNA polymerase I and III
Length = 406
Score = 37.7 bits (86), Expect = 0.14
Identities = 28/62 (45%), Positives = 33/62 (53%)
Frame = -3
Query: 660 DSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTS 481
DS SDS S S+S S + S DS+S D SD DS SS +SDSD+ S S
Sbjct: 186 DSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSD---SDSSSSSSS--SSSDSDSDSDS 240
Query: 480 SS 475
SS
Sbjct: 241 SS 242
Score = 37.0 bits (84), Expect(2) = 0.004
Identities = 26/61 (42%), Positives = 32/61 (51%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS+SSS SS+S E +ES DS+S S DS S +S SD+SS S
Sbjct: 152 SSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSD 211
Query: 477 S 475
S
Sbjct: 212 S 212
Score = 37.0 bits (84), Expect = 0.24
Identities = 25/64 (39%), Positives = 31/64 (48%)
Frame = -3
Query: 660 DSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTS 481
DS S SSS SS+ + + S DS+ D S S SS +SDSD+ S S
Sbjct: 220 DSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGS 279
Query: 480 SSPL 469
SS L
Sbjct: 280 SSEL 283
Score = 37.0 bits (84), Expect(2) = 7e-05
Identities = 31/65 (47%), Positives = 38/65 (57%), Gaps = 3/65 (4%)
Frame = -3
Query: 660 DSSSDSSSLFSSNSDEGSCS---TESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTS 490
+S SDSSS SS+SD S S ++S S+S D SD DS SS SDSD+S
Sbjct: 172 ESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSD---SDSSSSDSS----SDSDSS 224
Query: 489 STSSS 475
S+SSS
Sbjct: 225 SSSSS 229
Score = 36.2 bits (82), Expect = 0.41
Identities = 28/75 (37%), Positives = 36/75 (47%), Gaps = 6/75 (8%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDD------FSDYIFGDSGRGWSSLWRNSD 502
+ SSSDSSS S+S S S++S DS S D DS S+ +SD
Sbjct: 211 DSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSD 270
Query: 501 SDTSSTSSSPLNLQT 457
SD+ S S S L+T
Sbjct: 271 SDSDSDSGSSSELET 285
Score = 36.2 bits (82), Expect(2) = 0.002
Identities = 26/61 (42%), Positives = 32/61 (51%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS SS+S S S+ S S+S D SD +S SS +S S + S SS
Sbjct: 36 SSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESS 95
Query: 477 S 475
S
Sbjct: 96 S 96
Score = 35.8 bits (81), Expect(2) = 0.020
Identities = 26/60 (43%), Positives = 31/60 (51%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS SS+S S S ES S+S S DS SS +S S +SS+SS
Sbjct: 31 SSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSS 90
Score = 35.8 bits (81), Expect = 0.53
Identities = 31/65 (47%), Positives = 34/65 (51%), Gaps = 4/65 (6%)
Frame = -3
Query: 660 DSSSDS---SSLFSSNSDEGSCSTESRRDSTS-IDDFSDYIFGDSGRGWSSLWRNSDSDT 493
DSSSDS SS SS+SD S S+ S DS S D SD S SS +SD T
Sbjct: 205 DSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDEST 264
Query: 492 SSTSS 478
SS SS
Sbjct: 265 SSDSS 269
Score = 35.0 bits (79), Expect = 0.91
Identities = 25/61 (40%), Positives = 31/61 (49%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS SS+S S S+ S S+S S DS S +S S +SS+SS
Sbjct: 28 SSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSS 87
Query: 477 S 475
S
Sbjct: 88 S 88
Score = 34.7 bits (78), Expect = 1.2
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSID--DFSDY-IFGDSGRGWSSLWRNSDSDTSS 487
SSS SSS SS+S E S S+ S S+S D D SD S SS +SDS++SS
Sbjct: 37 SSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESSS 96
Query: 486 TSSS 475
S S
Sbjct: 97 ESDS 100
Score = 34.7 bits (78), Expect(2) = 5e-05
Identities = 25/60 (41%), Positives = 31/60 (51%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSSDSS SS+S+ S S+ S S+S D DS SS +S SD SS+ S
Sbjct: 63 SSSDSSD--SSDSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSES 120
Score = 34.7 bits (78), Expect = 1.2
Identities = 30/65 (46%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Frame = -3
Query: 660 DSSSDS-SSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDT--S 490
DS SDS SS SS+SD S S S DS+S D S S S +SDSD+ S
Sbjct: 190 DSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGS 249
Query: 489 STSSS 475
S SSS
Sbjct: 250 SDSSS 254
Score = 34.3 bits (77), Expect = 1.5
Identities = 24/71 (33%), Positives = 31/71 (42%)
Frame = -3
Query: 660 DSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTS 481
DSSSDS S S +SD S S S +STS D DSG + + +D S
Sbjct: 239 DSSSDSDS--SGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELETKEATADESKAE 296
Query: 480 SSPLNLQTFAP 448
+P + P
Sbjct: 297 ETPASSNESTP 307
Score = 34.3 bits (77), Expect = 1.5
Identities = 25/63 (39%), Positives = 30/63 (46%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSST 484
E SSS SSS SS+SD S S+S S DS S +S S +SS+
Sbjct: 51 ESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSS 110
Query: 483 SSS 475
SSS
Sbjct: 111 SSS 113
Score = 33.9 bits (76), Expect(2) = 5e-05
Identities = 31/101 (30%), Positives = 43/101 (41%)
Frame = -1
Query: 452 PLSDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVS 273
P S S S ++ +GS S+ D S S D E DS S
Sbjct: 148 PESSSSSESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQ----------S 197
Query: 272 SSSSSSSSSSRETDSFLKLRTDHFNDVNTNLSCRKSRKRTD 150
SSSSSSS SS ++DS +D +D +++ S S +D
Sbjct: 198 SSSSSSSDSSSDSDS---SSSDSSSDSDSSSSSSSSSSDSD 235
Score = 33.9 bits (76), Expect = 2.0
Identities = 28/64 (43%), Positives = 32/64 (49%), Gaps = 1/64 (1%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSD-YIFGDSGRGWSSLWRNSDSDTSS 487
E SSS SSS S S S S S S+S D SD S SS +SDSD+SS
Sbjct: 155 ESSSSGSSSSSESESGSESDSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSS 214
Query: 486 TSSS 475
+ SS
Sbjct: 215 SDSS 218
Score = 33.5 bits (75), Expect = 2.6
Identities = 26/61 (42%), Positives = 33/61 (53%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSSDSSS S+S + S ++S S+S SD S SS +SDS +SS SS
Sbjct: 202 SSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSS--GSSDSSSSSDSS 259
Query: 477 S 475
S
Sbjct: 260 S 260
Score = 33.1 bits (74), Expect = 3.5
Identities = 23/61 (37%), Positives = 29/61 (46%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS S+S S S+ S DS+ D S SS +S+S + S SS
Sbjct: 42 SSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESSSSSSSSSSSSSSSSDSESSSESDSS 101
Query: 477 S 475
S
Sbjct: 102 S 102
Score = 32.0 bits (71), Expect(2) = 1.5
Identities = 24/67 (35%), Positives = 29/67 (42%)
Frame = -1
Query: 428 DSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVSSSSSSSSS 249
DS S ++ + S SE D S S SS DS SSSSSSSS
Sbjct: 174 DSDSSSSSSSSSDSESDSESDSQSSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSD 233
Query: 248 SSRETDS 228
S ++DS
Sbjct: 234 SDSDSDS 240
Score = 31.2 bits (69), Expect(2) = 7e-05
Identities = 20/60 (33%), Positives = 26/60 (43%)
Frame = -1
Query: 389 TGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVSSSSSSSSSSSRETDSFLKLRT 210
+ SSS D S D + G DSS S +SS SS S S ++ S +L T
Sbjct: 226 SSSSSSSDSDSDSDSSSDSDSSGSSDSSSSSDSSSDESTSSDSSDSDSDSDSGSSSELET 285
Score = 30.4 bits (67), Expect(2) = 0.69
Identities = 27/85 (31%), Positives = 34/85 (39%), Gaps = 22/85 (25%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTES----------------------RRDSTSIDDFSDYI 550
+ SSS SSS SS+SDE S +ES + + S
Sbjct: 99 DSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKAKTEPESSSSSESSS 158
Query: 549 FGDSGRGWSSLWRNSDSDTSSTSSS 475
G S S SDSD+SS+SSS
Sbjct: 159 SGSSSSSESESGSESDSDSSSSSSS 183
Score = 26.9 bits (58), Expect(2) = 0.002
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 446 SDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVE-RKGVGDSSLHRKLDSGRVSS 270
SD S S ++ + S D R+RE D E K + + S SS
Sbjct: 98 SDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKAKTEPESSSSSESS 157
Query: 269 SSSSSSSSSRETDS 228
SS SSSSS E+ S
Sbjct: 158 SSGSSSSSESESGS 171
Score = 25.0 bits (53), Expect(2) = 0.004
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = -1
Query: 383 SSSEIDGPSHRSR---EMDVERKGVGDSSLHRKLDSGRVSSSSSSSSSSSRETDS 228
SSS+ D S S + D + DS SG SSSSS SSS T S
Sbjct: 217 SSSDSDSSSSSSSSSSDSDSDSDSSSDSD-----SSGSSDSSSSSDSSSDESTSS 266
Score = 23.9 bits (50), Expect(2) = 0.020
Identities = 18/76 (23%), Positives = 29/76 (37%)
Frame = -1
Query: 455 SPLSDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRV 276
S SD + ++G + SSS+ S + +R D+ ++ +
Sbjct: 87 SSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKETKKAKT 146
Query: 275 SSSSSSSSSSSRETDS 228
SSSSS SS S
Sbjct: 147 EPESSSSSESSSSGSS 162
Score = 23.9 bits (50), Expect(2) = 0.69
Identities = 21/80 (26%), Positives = 28/80 (34%)
Frame = -1
Query: 389 TGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVSSSSSSSSSSSRETDSFLKLRT 210
+ SSS S S + DSS S S S SSS S S +
Sbjct: 197 SSSSSSSSDSSSDSDSSSSDSSSDSDSSSSSSSSSSDSDSDSDSSSDSDSSGSSDSSSSS 256
Query: 209 DHFNDVNTNLSCRKSRKRTD 150
D +D +T+ S +D
Sbjct: 257 DSSSDESTSSDSSDSDSDSD 276
Score = 21.2 bits (43), Expect(2) = 1.5
Identities = 16/61 (26%), Positives = 23/61 (37%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS SSS S + + S S+S SD +S + R +SD
Sbjct: 81 SSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNEDAKE 140
Query: 477 S 475
+
Sbjct: 141 T 141
>ref|NP_267008.1| UNKNOWN PROTEIN [Lactococcus lactis subsp. lactis]
gi|25401280|pir||D86731 hypothetical protein yihD
[imported] - Lactococcus lactis subsp. lactis (strain
IL1403) gi|12723779|gb|AAK04950.1|AE006319_4 UNKNOWN
PROTEIN [Lactococcus lactis subsp. lactis]
Length = 1063
Score = 37.0 bits (84), Expect(2) = 2e-04
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS+SSS SSNS EGS ++ S DS+ S G S+ NS + ++SS
Sbjct: 736 SSSESSSASSSNSSEGSVASSSSVDSSQSSSAGVNSSSSSAEGSSASSSNSSESSIASSS 795
Query: 477 S 475
S
Sbjct: 796 S 796
Score = 33.1 bits (74), Expect(2) = 0.040
Identities = 22/61 (36%), Positives = 30/61 (49%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS+ SS SSNS E S ++ S DS+ S G S+ NS + ++SS
Sbjct: 660 SSSEGSSASSSNSSESSVASSSSVDSSQSSSAGVNSSSSSAEGSSASSSNSSESSVASSS 719
Query: 477 S 475
S
Sbjct: 720 S 720
Score = 32.7 bits (73), Expect = 4.5
Identities = 23/72 (31%), Positives = 36/72 (49%)
Frame = -3
Query: 657 SSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSS 478
SSS+ SS SSNS E + S+ + S+S S SS+ +S D+S +SS
Sbjct: 631 SSSNVSSNTSSNSSEANTSSSTSNASSSSSSSEGSSASSSNSSESSVASSSSVDSSQSSS 690
Query: 477 SPLNLQTFAPVG 442
+ +N + + G
Sbjct: 691 AGVNSSSSSAEG 702
Score = 29.3 bits (64), Expect(2) = 2e-04
Identities = 25/93 (26%), Positives = 40/93 (42%)
Frame = -1
Query: 455 SPLSDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRV 276
S ++ S +TG+ + S+ S S E V DSS + S V
Sbjct: 789 SSIASSSSVGSSQSSSTGVSSSSSSAEGSSASSSNSSESSVASSSSVDSS---QSSSAGV 845
Query: 275 SSSSSSSSSSSRETDSFLKLRTDHFNDVNTNLS 177
+SSSSSS SS + +F + + V+++ S
Sbjct: 846 NSSSSSSEGSSASSSNFSESSIGSSSSVDSSQS 878
Score = 27.7 bits (60), Expect(2) = 2.3
Identities = 22/76 (28%), Positives = 32/76 (41%), Gaps = 1/76 (1%)
Frame = -1
Query: 455 SPLSDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLD-SGR 279
S ++ DS + G+ + S+ S S E V DSS +G
Sbjct: 675 SSVASSSSVDSSQSSSAGVNSSSSSAEGSSASSSNSSESSVASSSSVDSSQSSSAGVNGS 734
Query: 278 VSSSSSSSSSSSRETD 231
SSS SSS+SSS ++
Sbjct: 735 SSSSESSSASSSNSSE 750
Score = 25.4 bits (54), Expect(2) = 0.040
Identities = 20/71 (28%), Positives = 27/71 (37%)
Frame = -1
Query: 455 SPLSDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRV 276
S ++ DS + G+ + SS S S E V DSS
Sbjct: 713 SSVASSSSVDSSQSSSAGVNGSSSSSESSSASSSNSSEGSVASSSSVDSSQSSSAGVNSS 772
Query: 275 SSSSSSSSSSS 243
SSS+ SS+SS
Sbjct: 773 SSSAEGSSASS 783
Score = 24.6 bits (52), Expect(2) = 2.3
Identities = 18/63 (28%), Positives = 31/63 (48%)
Frame = -3
Query: 663 EDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSST 484
+ SSS SSS +++S S + S S S + + ++ SS +S S ++S+
Sbjct: 614 QSSSSASSSSSAASSSTSSSNVSSNTSSNSSEANTSSSTSNASSSSSSSEGSSASSSNSS 673
Query: 483 SSS 475
SS
Sbjct: 674 ESS 676
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,737,238
Number of Sequences: 1393205
Number of extensions: 12720628
Number of successful extensions: 93974
Number of sequences better than 10.0: 201
Number of HSP's better than 10.0 without gapping: 52232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74439
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
