Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000059A_C03 KMC000059A_c03
(758 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF13346.1|AF122022_1 unknown [Eufolliculina uhligi] 46 7e-04
dbj|BAC65530.1| mKIAA0324 protein [Mus musculus] 45 9e-04
dbj|BAC41104.1| unnamed protein product [Mus musculus] 45 9e-04
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 45 9e-04
gb|AAL79515.1| Igr2p [Tetrahymena thermophila] 44 0.003
>gb|AAF13346.1|AF122022_1 unknown [Eufolliculina uhligi]
Length = 254
Score = 45.8 bits (107), Expect = 7e-04
Identities = 24/56 (42%), Positives = 32/56 (56%), Gaps = 4/56 (7%)
Frame = -1
Query: 518 PGQQSSSMSSSFPSTENASQQGYPPGFGPQKYPP--GFDPQKYPP--GFVPQKYHP 363
P QQ+ ++P + QGYPP PQ YPP G+ PQ YPP G+ PQ+ +P
Sbjct: 180 PPQQAYPPQQAYPPQQGYPPQGYPP---PQGYPPQQGYPPQAYPPQQGYPPQQGYP 232
Score = 38.1 bits (87), Expect = 0.14
Identities = 27/76 (35%), Positives = 33/76 (42%), Gaps = 23/76 (30%)
Frame = -1
Query: 518 PGQQSSSMSSSFPSTENASQQGYPPGFGPQK-YPP--------------GFDPQKYPP-- 390
P QQ ++P + QQGYPP PQ+ YPP G+ PQ YPP
Sbjct: 148 PPQQGYPPQQAYPP-QAYPQQGYPPQAYPQQAYPPQQAYPPQQAYPPQQGYPPQGYPPPQ 206
Query: 389 ------GFVPQKYHPQ 360
G+ PQ Y PQ
Sbjct: 207 GYPPQQGYPPQAYPPQ 222
Score = 37.7 bits (86), Expect = 0.18
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = -1
Query: 518 PGQQSSSMSSSFPSTENASQQGYPP--GFGPQK-YPPGFDPQK-YPPGFVPQKYHP 363
P Q ++ + P QQ YPP G+ PQ+ YPP PQ+ YPP PQ+ +P
Sbjct: 125 PKQNPNAQHAGHPPQGYPPQQAYPPQQGYPPQQAYPPQAYPQQGYPPQAYPQQAYP 180
>dbj|BAC65530.1| mKIAA0324 protein [Mus musculus]
Length = 1754
Score = 45.4 bits (106), Expect = 9e-04
Identities = 34/107 (31%), Positives = 43/107 (39%)
Frame = -1
Query: 707 EFAYKTLTGEIPVEENVATQGCIQQPASRNEKRDDGLTLPDFGFSSFSQSDISFQYDIGM 528
E A K + PV + +G Q+P KR + SS S S S
Sbjct: 1578 EVALKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSS------- 1630
Query: 527 MSMPGQQSSSMSSSFPSTENASQQGYPPGFGPQKYPPGFDPQKYPPG 387
S SSS SSS S+ ++S P GPQ P P+K PPG
Sbjct: 1631 -SSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPG 1676
>dbj|BAC41104.1| unnamed protein product [Mus musculus]
Length = 2607
Score = 45.4 bits (106), Expect = 9e-04
Identities = 34/107 (31%), Positives = 43/107 (39%)
Frame = -1
Query: 707 EFAYKTLTGEIPVEENVATQGCIQQPASRNEKRDDGLTLPDFGFSSFSQSDISFQYDIGM 528
E A K + PV + +G Q+P KR + SS S S S
Sbjct: 2431 EVALKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSS------- 2483
Query: 527 MSMPGQQSSSMSSSFPSTENASQQGYPPGFGPQKYPPGFDPQKYPPG 387
S SSS SSS S+ ++S P GPQ P P+K PPG
Sbjct: 2484 -SSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPG 2529
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 45.4 bits (106), Expect = 9e-04
Identities = 34/107 (31%), Positives = 43/107 (39%)
Frame = -1
Query: 707 EFAYKTLTGEIPVEENVATQGCIQQPASRNEKRDDGLTLPDFGFSSFSQSDISFQYDIGM 528
E A K + PV + +G Q+P KR + SS S S S
Sbjct: 2431 EVALKRVPSPTPVPKEAIREGRPQEPTPAKRKRRSSSSSSSSSSSSSSSSSSS------- 2483
Query: 527 MSMPGQQSSSMSSSFPSTENASQQGYPPGFGPQKYPPGFDPQKYPPG 387
S SSS SSS S+ ++S P GPQ P P+K PPG
Sbjct: 2484 -SSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPG 2529
>gb|AAL79515.1| Igr2p [Tetrahymena thermophila]
Length = 242
Score = 43.9 bits (102), Expect = 0.003
Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 8/54 (14%)
Frame = -1
Query: 485 FPSTENASQQGYPP--GFGPQK-YPP--GFDPQK-YPP--GFVPQKYHPQYNKN 348
+P+ QQGYPP G+ PQ+ YPP G+ PQ+ YPP G+ PQ+ +PQY N
Sbjct: 186 YPAQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPPQQGYPQYPPN 239
Score = 37.4 bits (85), Expect = 0.24
Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 10/115 (8%)
Frame = -1
Query: 677 IPVEENVATQGCIQQPASRNEKRDDGLTLPDFGFSSFSQSDISFQYDIGMMSMPGQQSSS 498
+P ++NVA +QQP + + GF Q QY PGQQ
Sbjct: 121 LPDQQNVAY--VVQQPVAYGQP----------GFQPVMQQGYP-QYP-AQQPYPGQQPYP 166
Query: 497 MSSSFPSTENASQQGYPPGFG-----PQKYPP--GFDPQK-YPP--GFVPQKYHP 363
+ +P QQ YPP G Q YPP G+ PQ+ YPP G+ PQ+ +P
Sbjct: 167 VQQPYPP-----QQAYPPQAGYPQYPAQGYPPQQGYPPQQGYPPQQGYPPQQGYP 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 642,297,245
Number of Sequences: 1393205
Number of extensions: 14446689
Number of successful extensions: 43080
Number of sequences better than 10.0: 169
Number of HSP's better than 10.0 without gapping: 35881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41650
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
