Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000058A_C01 KMC000058A_c01
(848 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565900.1| putative ABC transporter; protein id: At2g39190... 46 6e-04
pir||T02583 probable ABC transporter At2g39190 [imported] - Arab... 46 6e-04
ref|NP_142229.1| hypothetical protein [Pyrococcus horikoshii] gi... 33 7.0
gb|AAD42968.1|AF155228_1 reverse transcriptase [Orobanche aegypt... 32 9.1
>ref|NP_565900.1| putative ABC transporter; protein id: At2g39190.2 [Arabidopsis
thaliana] gi|20197257|gb|AAC28988.2| putative ABC
transporter; alternative splicing isoform gene
prediction data combined with cDNA alignment data to
generate this model [Arabidopsis thaliana]
Length = 814
Score = 46.2 bits (108), Expect = 6e-04
Identities = 19/40 (47%), Positives = 31/40 (77%)
Frame = -3
Query: 555 TARCIKLLMLRFCWASILITITASTLALHRVVMSLSEVYL 436
+A+ ++LMLRFCW S ++++T + LA HR V+S+SE Y+
Sbjct: 762 SAKSDRVLMLRFCWTSFVMSLTTTALACHRFVISVSEGYV 801
>pir||T02583 probable ABC transporter At2g39190 [imported] - Arabidopsis
thaliana
Length = 791
Score = 46.2 bits (108), Expect = 6e-04
Identities = 19/40 (47%), Positives = 31/40 (77%)
Frame = -3
Query: 555 TARCIKLLMLRFCWASILITITASTLALHRVVMSLSEVYL 436
+A+ ++LMLRFCW S ++++T + LA HR V+S+SE Y+
Sbjct: 739 SAKSDRVLMLRFCWTSFVMSLTTTALACHRFVISVSEGYV 778
>ref|NP_142229.1| hypothetical protein [Pyrococcus horikoshii] gi|7518539|pir||B71247
hypothetical protein PH0233 - Pyrococcus horikoshii
gi|3256622|dbj|BAA29305.1| 387aa long hypothetical
protein [Pyrococcus horikoshii]
Length = 387
Score = 32.7 bits (73), Expect = 7.0
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Frame = -1
Query: 773 YIGHRNFKLHQVFLGQDMWVVSTHY---------------TQNEHKVHMHTWMQSHCTCN 639
YIG R ++ H +FLG + ++S + + H V M + S +
Sbjct: 60 YIGDRGYRFHAMFLGNILGIISGVFYIISAMFHSIFIFAIGRAIHGVGMGIFFPSSLSSA 119
Query: 638 IDIVTSNPLGDQTGYRGDSFHKGS 567
+D+ +G+ G+RG F G+
Sbjct: 120 VDLAPKGRVGEALGWRGMMFSLGN 143
>gb|AAD42968.1|AF155228_1 reverse transcriptase [Orobanche aegyptiaca]
Length = 88
Score = 32.3 bits (72), Expect = 9.1
Identities = 16/44 (36%), Positives = 22/44 (49%)
Frame = +2
Query: 593 YSLSDLLEDWMSLYLYCMCNVIASMCAYEPCVRFVCNVSIQPTY 724
Y L W + CM N+ S AY+PC+ F C +S PT+
Sbjct: 37 YGLKQSPRQWNKKFDDCMLNLKFSRSAYDPCLYFKC-ISDVPTF 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 726,919,051
Number of Sequences: 1393205
Number of extensions: 15759284
Number of successful extensions: 30901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30841
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44594917920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
