Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000056A_C04 KMC000056A_c04
(669 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB07798.1| IDS3 [Hordeum vulgare subsp. vulgare] 57 2e-07
pir||T05903 iron deficiency protein Ids3 - barley gi|520582|dbj|... 57 3e-07
dbj|BAA75493.1| IDS3 [Hordeum vulgare subsp. vulgare] 57 3e-07
pir||T05743 dioxygenase homolog - barley 55 7e-07
ref|NP_187970.1| unknown protein; protein id: At3g13610.1 [Arabi... 50 3e-05
>dbj|BAB07798.1| IDS3 [Hordeum vulgare subsp. vulgare]
Length = 339
Score = 57.4 bits (137), Expect = 2e-07
Identities = 26/55 (47%), Positives = 38/55 (68%)
Frame = -1
Query: 663 VEHRVVTNSSISRTTVAYFIRPKQEEIVEPAKALVRTGAHPIYRSIAFEEFLRIF 499
+EHR +TNS ++RT+VA FI P QE ++ PAK + P YR+I F +F+RI+
Sbjct: 263 IEHRAMTNSVLARTSVATFIMPTQECLIGPAKEFLSEENPPCYRTIMFRDFMRIY 317
>pir||T05903 iron deficiency protein Ids3 - barley gi|520582|dbj|BAA07042.1|
Ids3 [Hordeum vulgare subsp. vulgare]
Length = 339
Score = 56.6 bits (135), Expect = 3e-07
Identities = 25/55 (45%), Positives = 38/55 (68%)
Frame = -1
Query: 663 VEHRVVTNSSISRTTVAYFIRPKQEEIVEPAKALVRTGAHPIYRSIAFEEFLRIF 499
+EHR +TNS+++RT+VA FI P QE ++ PAK + P YR+ F +F+RI+
Sbjct: 263 IEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKENPPCYRTTMFRDFMRIY 317
>dbj|BAA75493.1| IDS3 [Hordeum vulgare subsp. vulgare]
Length = 339
Score = 56.6 bits (135), Expect = 3e-07
Identities = 25/55 (45%), Positives = 38/55 (68%)
Frame = -1
Query: 663 VEHRVVTNSSISRTTVAYFIRPKQEEIVEPAKALVRTGAHPIYRSIAFEEFLRIF 499
+EHR +TNS+++RT+VA FI P QE ++ PAK + P YR+ F +F+RI+
Sbjct: 263 IEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKENPPCYRTTMFRDFMRIY 317
>pir||T05743 dioxygenase homolog - barley
Length = 169
Score = 55.5 bits (132), Expect = 7e-07
Identities = 25/55 (45%), Positives = 37/55 (66%)
Frame = -1
Query: 663 VEHRVVTNSSISRTTVAYFIRPKQEEIVEPAKALVRTGAHPIYRSIAFEEFLRIF 499
+EHR +TNS ++RT+VA FI P QE ++ PAK + P YR+ F +F+RI+
Sbjct: 93 IEHRAMTNSVLARTSVATFIMPTQECLIGPAKEFLSEENPPCYRTTIFRDFMRIY 147
>ref|NP_187970.1| unknown protein; protein id: At3g13610.1 [Arabidopsis thaliana]
gi|11994563|dbj|BAB02603.1| leucoanthocyanidin
dioxygenase-like protein [Arabidopsis thaliana]
Length = 361
Score = 50.1 bits (118), Expect = 3e-05
Identities = 19/55 (34%), Positives = 33/55 (59%)
Frame = -1
Query: 663 VEHRVVTNSSISRTTVAYFIRPKQEEIVEPAKALVRTGAHPIYRSIAFEEFLRIF 499
VEHRV+ N +R +V F+ PK E ++ P ++ G PIYR + + ++++ F
Sbjct: 291 VEHRVLANGYNNRISVPIFVNPKPESVIGPLPEVIANGEEPIYRDVLYSDYVKYF 345
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,968,802
Number of Sequences: 1393205
Number of extensions: 11098005
Number of successful extensions: 22270
Number of sequences better than 10.0: 192
Number of HSP's better than 10.0 without gapping: 21556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22231
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
