Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000055A_C01 KMC000055A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177614.1| hypothetical protein; protein id: At1g74760.1 [... 178 5e-45
pir||A86323 protein F14D16.3 [imported] - Arabidopsis thaliana g... 177 1e-44
ref|NP_173325.1| hypothetical protein; protein id: At1g18910.1 [... 177 2e-44
ref|NP_188457.1| zinc finger protein, putative; protein id: At3g... 143 2e-35
dbj|BAB01179.1| gb|AAD55299.1~gene_id:MIE15.8~similar to unknown... 143 2e-35
>ref|NP_177614.1| hypothetical protein; protein id: At1g74760.1 [Arabidopsis
thaliana] gi|25406374|pir||H96776 hypothetical protein
F25A4.27 [imported] - Arabidopsis thaliana
gi|5882747|gb|AAD55300.1|AC008263_31 Similar to
gb|AF049930 PGP237-11 from Petunia x hybrida and
contains a PF|00097 Zinc (RING) finger domain.
[Arabidopsis thaliana]
Length = 255
Score = 178 bits (452), Expect(2) = 5e-45
Identities = 79/96 (82%), Positives = 88/96 (91%)
Frame = -3
Query: 619 CREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGNMQV 440
CREK LEDNCPICHEYIFTS SPVKALPCGH+MHSTCFQEYTC +YTCP+CSKSLG+MQV
Sbjct: 140 CREKCLEDNCPICHEYIFTSSSPVKALPCGHLMHSTCFQEYTCSHYTCPVCSKSLGDMQV 199
Query: 439 YFEMLDALVAEEKISDELSGQTQVILCNDCEKKGAA 332
YF+MLDAL+AEEK+ DE S +TQVILCNDC +KG A
Sbjct: 200 YFKMLDALLAEEKMPDEYSNKTQVILCNDCGRKGNA 235
Score = 24.6 bits (52), Expect(2) = 5e-45
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = -1
Query: 345 RKEQPSFHWLYHK 307
RK +HWLYHK
Sbjct: 231 RKGNAPYHWLYHK 243
>pir||A86323 protein F14D16.3 [imported] - Arabidopsis thaliana
gi|8778297|gb|AAF79306.1|AC068602_29 F14D16.3
[Arabidopsis thaliana]
Length = 1260
Score = 177 bits (448), Expect(2) = 1e-44
Identities = 80/96 (83%), Positives = 86/96 (89%)
Frame = -3
Query: 619 CREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGNMQV 440
CREK LEDNCPICHEYIFTS SPVKALPCGHVMHSTCFQEYTC +YTCPICSKSLG+MQV
Sbjct: 1145 CREKCLEDNCPICHEYIFTSNSPVKALPCGHVMHSTCFQEYTCSHYTCPICSKSLGDMQV 1204
Query: 439 YFEMLDALVAEEKISDELSGQTQVILCNDCEKKGAA 332
YF MLDAL+AE+K+ DE QTQVILCNDC +KG A
Sbjct: 1205 YFRMLDALLAEQKMPDEYLNQTQVILCNDCGRKGNA 1240
Score = 24.6 bits (52), Expect(2) = 1e-44
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = -1
Query: 345 RKEQPSFHWLYHK 307
RK +HWLYHK
Sbjct: 1236 RKGNAPYHWLYHK 1248
>ref|NP_173325.1| hypothetical protein; protein id: At1g18910.1 [Arabidopsis
thaliana]
Length = 195
Score = 177 bits (448), Expect(2) = 2e-44
Identities = 80/96 (83%), Positives = 86/96 (89%)
Frame = -3
Query: 619 CREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGNMQV 440
CREK LEDNCPICHEYIFTS SPVKALPCGHVMHSTCFQEYTC +YTCPICSKSLG+MQV
Sbjct: 80 CREKCLEDNCPICHEYIFTSNSPVKALPCGHVMHSTCFQEYTCSHYTCPICSKSLGDMQV 139
Query: 439 YFEMLDALVAEEKISDELSGQTQVILCNDCEKKGAA 332
YF MLDAL+AE+K+ DE QTQVILCNDC +KG A
Sbjct: 140 YFRMLDALLAEQKMPDEYLNQTQVILCNDCGRKGNA 175
Score = 24.6 bits (52), Expect(2) = 2e-44
Identities = 8/13 (61%), Positives = 9/13 (68%)
Frame = -1
Query: 345 RKEQPSFHWLYHK 307
RK +HWLYHK
Sbjct: 171 RKGNAPYHWLYHK 183
>ref|NP_188457.1| zinc finger protein, putative; protein id: At3g18290.1, supported by
cDNA: gi_20453198 [Arabidopsis thaliana]
gi|20453199|gb|AAM19839.1| AT3g18290/MIE15_8 [Arabidopsis
thaliana] gi|29028750|gb|AAO64754.1| At3g18290/MIE15_8
[Arabidopsis thaliana]
Length = 1254
Score = 143 bits (361), Expect(3) = 2e-35
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -3
Query: 619 CREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGNMQV 440
C EKSLE NCPIC E++FTS V+ALPCGH MHS CFQ YTC +YTCPIC KSLG+M V
Sbjct: 1126 CLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKSLGDMAV 1185
Query: 439 YFEMLDALVAEEKISDELSGQTQVILCNDCEKKG 338
YF MLDAL+A E++ +E + Q ILCNDCE+KG
Sbjct: 1186 YFGMLDALLAAEELPEEYKNRCQDILCNDCERKG 1219
Score = 25.8 bits (55), Expect(3) = 2e-35
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 348 KRKEQPSFHWLYHK 307
+RK FHWLYHK
Sbjct: 1216 ERKGTTRFHWLYHK 1229
Score = 22.3 bits (46), Expect(3) = 2e-35
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 299 SCGSYNTR 276
SCGSYNTR
Sbjct: 1232 SCGSYNTR 1239
>dbj|BAB01179.1| gb|AAD55299.1~gene_id:MIE15.8~similar to unknown protein [Arabidopsis
thaliana]
Length = 1232
Score = 143 bits (361), Expect(3) = 2e-35
Identities = 63/94 (67%), Positives = 74/94 (78%)
Frame = -3
Query: 619 CREKSLEDNCPICHEYIFTSCSPVKALPCGHVMHSTCFQEYTCFNYTCPICSKSLGNMQV 440
C EKSLE NCPIC E++FTS V+ALPCGH MHS CFQ YTC +YTCPIC KSLG+M V
Sbjct: 1104 CLEKSLETNCPICCEFLFTSSEAVRALPCGHYMHSACFQAYTCSHYTCPICGKSLGDMAV 1163
Query: 439 YFEMLDALVAEEKISDELSGQTQVILCNDCEKKG 338
YF MLDAL+A E++ +E + Q ILCNDCE+KG
Sbjct: 1164 YFGMLDALLAAEELPEEYKNRCQDILCNDCERKG 1197
Score = 25.8 bits (55), Expect(3) = 2e-35
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -1
Query: 348 KRKEQPSFHWLYHK 307
+RK FHWLYHK
Sbjct: 1194 ERKGTTRFHWLYHK 1207
Score = 22.3 bits (46), Expect(3) = 2e-35
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 299 SCGSYNTR 276
SCGSYNTR
Sbjct: 1210 SCGSYNTR 1217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,848,153
Number of Sequences: 1393205
Number of extensions: 10267490
Number of successful extensions: 23301
Number of sequences better than 10.0: 712
Number of HSP's better than 10.0 without gapping: 22558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23234
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
