Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000054A_C02 KMC000054A_c02
(745 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA34480.1| predicted protein [Neurospora crassa] 35 1.5
ref|NP_596530.1| zinc finger protein [Schizosaccharomyces pombe]... 34 2.5
ref|NP_703682.1| hypothetical protein [Plasmodium falciparum 3D7... 28 2.7
ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.3
gb|AAO51818.1| similar to Kaposi's sarcoma-associated herpesviru... 33 3.3
>gb|EAA34480.1| predicted protein [Neurospora crassa]
Length = 199
Score = 34.7 bits (78), Expect = 1.5
Identities = 19/67 (28%), Positives = 25/67 (36%), Gaps = 3/67 (4%)
Frame = +2
Query: 254 NKEDTKGNNKFRGKN*AKQSSTHHRNQDHDPSSSCEIPL---QQHQTSLKANQHTSQKSA 424
N + NN N + +H N H P C PL QQH HT+ +
Sbjct: 44 NNNNNNNNNNNNNNNNNNNTRNYHYNNHHSPDGLCHQPLCPYQQHPHPNHTPSHTAAFTT 103
Query: 425 PAQAKNQ 445
P Q + Q
Sbjct: 104 PIQGQLQ 110
>ref|NP_596530.1| zinc finger protein [Schizosaccharomyces pombe]
gi|7493742|pir||T40817 zinc finger protein - fission
yeast (Schizosaccharomyces pombe)
gi|3810847|emb|CAA21808.1| zinc finger protein
[Schizosaccharomyces pombe]
Length = 673
Score = 33.9 bits (76), Expect = 2.5
Identities = 30/122 (24%), Positives = 49/122 (39%)
Frame = +3
Query: 108 LKSLLKYQVHLSDTAHEFFFPGKEKNVFKKTSLRTTYSEIGKKRKHTRKTRRIQRETISS 287
L+ KY HL + F + K L T SEI K+RK RK + ++ E
Sbjct: 497 LRQRFKYMAHLPEGCEVAFIECDWSKIIPKEVLLTFKSEISKRRKQ-RKAQEMREERYRQ 555
Query: 288 EAKTKQNKAAHIIEIRIMTRPHLVRFHSSNIKQA*KQINTHHKNQHLHKPRTRNNELSVS 467
A +++ I M RP + +A + +HH+ + + T + LS +
Sbjct: 556 RA--ERDTEEQIYSELNMQRPVPKTVVHEDPAEAFPTLGSHHQFESTDEVNTDESTLSTA 613
Query: 468 VT 473
T
Sbjct: 614 KT 615
>ref|NP_703682.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498343|emb|CAD50294.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1437
Score = 28.1 bits (61), Expect(2) = 2.7
Identities = 14/46 (30%), Positives = 25/46 (53%), Gaps = 2/46 (4%)
Frame = +3
Query: 366 HSSNIKQA*KQ-INTHHKNQHLHKPRTRNN-ELSVSVTTQPNQKFN 497
HS+N ++ K+ +N +H N H+H +NN ++V + N N
Sbjct: 935 HSNNNERGNKKYMNNYHVNSHVHNKENKNNINNRINVISNNNNNIN 980
Score = 24.3 bits (51), Expect(2) = 2.7
Identities = 11/47 (23%), Positives = 24/47 (50%)
Frame = +2
Query: 203 SENNLLRDR*KKETYKKNKEDTKGNNKFRGKN*AKQSSTHHRNQDHD 343
+ENN+ ++ K+ KKN + NN N ++ ++ N +++
Sbjct: 856 NENNMNKE---KDNKKKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 899
>ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496006|gb|AAN35668.1|AE014837_10 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1477
Score = 33.5 bits (75), Expect = 3.3
Identities = 36/130 (27%), Positives = 56/130 (42%), Gaps = 4/130 (3%)
Frame = +2
Query: 203 SENNLLRDR*KKETYKKNKEDTKGNNKFRGKN*AKQSSTHHRNQDHDPSSSCEIPLQQHQ 382
SEN L D KK+ KKNK++ K NK + KN S T H+ +H+ + +
Sbjct: 192 SENINLLDILKKKKNKKNKKNKKKKNK-KTKNTQILSCTQHKMYEHN--------MNESN 242
Query: 383 TSLKAN---QHTSQKSAPAQAKNQK**VISQRNDTTKSEI*HSIKTPLNIRNSITNMPL- 550
+ K N +HT + + KN K +N+ + K N+I N+ +
Sbjct: 243 FTKKDNVNCEHTDKMNISLHEKNDK------KNEKKNEKKNKKKKLFKYFSNNIENLIIE 296
Query: 551 NTWTWISSEI 580
N TW E+
Sbjct: 297 NYQTWSLREV 306
>gb|AAO51818.1| similar to Kaposi's sarcoma-associated herpesvirus (KSHV) (Human
herpesvirus 8). ORF73 homolog [Dictyostelium discoideum]
Length = 3417
Score = 33.5 bits (75), Expect = 3.3
Identities = 19/71 (26%), Positives = 33/71 (45%), Gaps = 4/71 (5%)
Frame = +2
Query: 248 KKNKEDTKGNNKFRGKN*AKQSSTHHRNQDHDPSSSCEIPLQQHQTSL----KANQHTSQ 415
KK+ E+ NN + N + S+ + N ++ +++ QQHQ S + Q T Q
Sbjct: 2894 KKDDENNNNNNNYNNNN-SNNSNNSYNNNNNTNTNNTNNQSQQHQQSTQHQPRPQQQTQQ 2952
Query: 416 KSAPAQAKNQK 448
K P Q ++
Sbjct: 2953 KQQPPQQSQKQ 2963
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,233,368
Number of Sequences: 1393205
Number of extensions: 12999232
Number of successful extensions: 37914
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 34989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37650
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
