Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000053A_C03 KMC000053A_c03
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_497469.1| Putative membrane protein, with at least 3 tran... 35 0.88
gb|EAA16869.1| hypothetical protein [Plasmodium yoelii yoelii] 34 1.2
gb|AAO23102.1| putative transposon protein [Oryza sativa (japoni... 33 2.0
gb|EAA16749.1| hypothetical protein [Plasmodium yoelii yoelii] 33 3.3
gb|AAK92605.1|AC078944_16 Putative transposable element [Oryza s... 33 3.3
>ref|NP_497469.1| Putative membrane protein, with at least 3 transmembrane domains,
nematode specific [Caenorhabditis elegans]
Length = 369
Score = 34.7 bits (78), Expect = 0.88
Identities = 36/89 (40%), Positives = 44/89 (48%), Gaps = 3/89 (3%)
Frame = +2
Query: 299 LESIGFLHLKVS---QFYIGLSWREMGSLCLELPHF*TIPSTSSPFSLSTGKSMSRNPIR 469
+ESI LK+S F I L E L L L S S SLS S+S +
Sbjct: 282 IESIENQILKISAFGSFLISLITAETARLSLSLS---LSLSLSLSLSLSLSLSLSLSLSL 338
Query: 470 NRTLXCRLIPSLTDSLSLSLYLSLSLKRS 556
+ +L L SL+ SLSLSL+LSLSL S
Sbjct: 339 SLSLSLSLSLSLSLSLSLSLFLSLSLSLS 367
>gb|EAA16869.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 222
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +2
Query: 8 SIIHECHQCKEEKHISNHSNTCQSGSTSSSNSKWFYIKDKRERKSTLS*RSKATQPQPLF 187
++ HEC +CK K S S + + +T N FY++D ++K K+T+ + L+
Sbjct: 125 TVNHECKRCKCLKIQSQKSISNKCQNTIVYNKTSFYVEDNNKKKKKKKNAKKSTKKKSLY 184
Query: 188 DEQ 196
Q
Sbjct: 185 QNQ 187
>gb|AAO23102.1| putative transposon protein [Oryza sativa (japonica
cultivar-group)]
Length = 385
Score = 33.5 bits (75), Expect = 2.0
Identities = 19/60 (31%), Positives = 30/60 (49%), Gaps = 5/60 (8%)
Frame = -2
Query: 437 WTERKDLKLKELFKNVEVLNIRNPFP-----AKKVLCRTEIPSDVENQCFQECTFFLGEF 273
W+++ +L EL K E+L + N P AKKV+C + + C +C + GEF
Sbjct: 199 WSDKSFTELLELLK--EILPMDNVLPESTYQAKKVICLLGLDIQKIHACLNDCILYRGEF 256
>gb|EAA16749.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2140
Score = 32.7 bits (73), Expect = 3.3
Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 10/137 (7%)
Frame = +2
Query: 8 SIIHECHQCKEEKHISNHSNTCQSGSTSSSNSKWFYIKDKRERKSTLS*RSKATQPQPLF 187
+II + + +S N S +SN+K KD++E +S S + +
Sbjct: 1907 AIIESSEENSSDSDVSYKINIKNSKKKKTSNNKNAQKKDEQEEESNTSSSDEQIAKENKN 1966
Query: 188 D----------EQAEKPHSF*YAIFTAQSSHNMRGTEQQTHQEKRCTLESIGFLHLKVSQ 337
D E+ +KP +N G EQ THQE +S+
Sbjct: 1967 DDENSDGEEKNEEIKKPKEIELQTENEMIQNNENGYEQNTHQEME-----------DISK 2015
Query: 338 FYIGLSWREMGSLCLEL 388
Y S++ GSLCL++
Sbjct: 2016 IY--RSYQFNGSLCLKI 2030
>gb|AAK92605.1|AC078944_16 Putative transposable element [Oryza sativa]
Length = 537
Score = 32.7 bits (73), Expect = 3.3
Identities = 19/60 (31%), Positives = 29/60 (47%), Gaps = 5/60 (8%)
Frame = -2
Query: 437 WTERKDLKLKELFKNVEVLNIRNPFP-----AKKVLCRTEIPSDVENQCFQECTFFLGEF 273
W+++ +L EL K E+L N P AKKV+C + + C +C + GEF
Sbjct: 165 WSDKSFTELLELLK--EILPTDNVLPESTYQAKKVICPLGLDIQKIHACLNDCILYRGEF 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,667,888
Number of Sequences: 1393205
Number of extensions: 9631588
Number of successful extensions: 40298
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 26302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34488
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
