Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000052A_C01 KMC000052A_c01
(719 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198971.1| unknown protein; protein id: At5g41560.1 [Arabi... 49 2e-09
gb|EAA22833.1| hypothetical protein [Plasmodium yoelii yoelii] 33 3.1
gb|AAG21348.1|AF275307_4 unknown [Helicobacter pylori] 33 4.0
sp||HUNB_DROAD_1 [Segment 1 of 2] Hunchback protein gi|2896826|g... 32 8.9
>ref|NP_198971.1| unknown protein; protein id: At5g41560.1 [Arabidopsis thaliana]
gi|10178010|dbj|BAB11462.1| gene_id:MBK23.8~unknown
protein [Arabidopsis thaliana]
Length = 101
Score = 48.5 bits (114), Expect(2) = 2e-09
Identities = 23/45 (51%), Positives = 33/45 (73%)
Frame = -2
Query: 511 VITSETRNILLRNIYKHAEEKLKPKRAASGNLLPEHGCKQPRVST 377
VIT+E +NIL+R+ Y+ AEEKL+PKR A+ +L EH K R ++
Sbjct: 49 VITTEVKNILIRSFYQRAEEKLRPKRPATDHLAAEHVNKHFRAAS 93
Score = 35.8 bits (81), Expect(2) = 2e-09
Identities = 14/22 (63%), Positives = 17/22 (76%)
Frame = -3
Query: 621 KMRPATYHATHSKTLPPADQVV 556
KM P TY TH++TLPP DQV+
Sbjct: 29 KMVPTTYRPTHNRTLPPPDQVI 50
>gb|EAA22833.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 599
Score = 33.5 bits (75), Expect = 3.1
Identities = 21/74 (28%), Positives = 38/74 (50%), Gaps = 2/74 (2%)
Frame = +2
Query: 23 NKKIRAQNIFQ--NPNDNHKEENETLFKAWIFLNYLQKLLSTV*HTKHVQNYTFESSSSS 196
NKK +NIF+ N +K NET F W+ ++L++ + ++ +E + S
Sbjct: 514 NKKELGKNIFRYSNKYKKYKYNNETGF--WMSNIDKRRLINPEKNDSYITELVYEKNESY 571
Query: 197 SSFHSLYIFMGIQI 238
S H L+ ++ I+I
Sbjct: 572 SELHILFFYINIEI 585
>gb|AAG21348.1|AF275307_4 unknown [Helicobacter pylori]
Length = 304
Score = 33.1 bits (74), Expect = 4.0
Identities = 20/64 (31%), Positives = 37/64 (57%)
Frame = +3
Query: 204 FIHCTFSWEYKFTHSKSVADNLVRDFKQAPNSWLNKSIYIFQKVAHNHMQQLVNDKHQVE 383
F H +F+ + K K++ L+ D QAP+S+LN SI ++ + +Q + ND + ++
Sbjct: 212 FCHNSFALDDKKDGDKNLDICLINDRMQAPSSFLNNSIASSLAIS-DIIQFMPNDFNSIK 270
Query: 384 TLGC 395
+L C
Sbjct: 271 SLNC 274
>sp||HUNB_DROAD_1 [Segment 1 of 2] Hunchback protein gi|2896826|gb|AAC03244.1|
hunchback protein [Drosophila adiastola]
Length = 101
Score = 32.0 bits (71), Expect = 8.9
Identities = 23/84 (27%), Positives = 38/84 (44%)
Frame = +3
Query: 174 PLSPHHHHRHFIHCTFSWEYKFTHSKSVADNLVRDFKQAPNSWLNKSIYIFQKVAHNHMQ 353
P+S HHHH H H + ++S S A + + +PN N ++ + Q + H Q
Sbjct: 14 PIS-HHHHHHHAHHSRRQHPHDSNSNSNASSPHQSPLPSPNPPSNTNLQLEQYLKHQQQQ 72
Query: 354 QLVNDKHQVETLGCLHPCSGKRLP 425
Q +HQ + + L C+ P
Sbjct: 73 Q--QQQHQQQPMDTL--CAAAMTP 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,515,914
Number of Sequences: 1393205
Number of extensions: 12117571
Number of successful extensions: 35874
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35442
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
