Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000050A_C01 KMC000050A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193471.1| hypothetical protein; protein id: At4g17410.1 [... 48 1e-04
pir||E71443 probable DNA-binding protein - Arabidopsis thaliana ... 48 1e-04
ref|NP_199554.1| DNA-binding protein-like; protein id: At5g47430... 44 0.002
ref|NP_723700.1| CG6686-PA [Drosophila melanogaster] gi|16197967... 40 0.030
ref|NP_609529.2| CG6686-PB [Drosophila melanogaster] gi|22946280... 40 0.030
>ref|NP_193471.1| hypothetical protein; protein id: At4g17410.1 [Arabidopsis
thaliana]
Length = 744
Score = 47.8 bits (112), Expect = 1e-04
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Frame = -1
Query: 602 HRDLADFSMGMNVPPPPPVMSREEFEARKADLRRKRENE-RRGE-----RDFSQEREFGR 441
+RDLA+ MN+ P +M REEFEA+K +++RKRENE RR E RD + R
Sbjct: 489 YRDLAEMGNRMNLQHP--IMGREEFEAKKTEMKRKRENEIRRSEGGNVVRDSEKSRIMNN 546
Query: 440 EASSVGDVSSMKPKT 396
A + S +KPK+
Sbjct: 547 SAVT---SSPVKPKS 558
>pir||E71443 probable DNA-binding protein - Arabidopsis thaliana
gi|2245100|emb|CAB10522.1| DNA-binding protein homolog
[Arabidopsis thaliana] gi|7268493|emb|CAB78744.1|
DNA-binding protein homolog [Arabidopsis thaliana]
Length = 459
Score = 47.8 bits (112), Expect = 1e-04
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Frame = -1
Query: 602 HRDLADFSMGMNVPPPPPVMSREEFEARKADLRRKRENE-RRGE-----RDFSQEREFGR 441
+RDLA+ MN+ P +M REEFEA+K +++RKRENE RR E RD + R
Sbjct: 204 YRDLAEMGNRMNLQHP--IMGREEFEAKKTEMKRKRENEIRRSEGGNVVRDSEKSRIMNN 261
Query: 440 EASSVGDVSSMKPKT 396
A + S +KPK+
Sbjct: 262 SAVT---SSPVKPKS 273
>ref|NP_199554.1| DNA-binding protein-like; protein id: At5g47430.1 [Arabidopsis
thaliana]
Length = 879
Score = 43.5 bits (101), Expect = 0.002
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = -1
Query: 602 HRDLADFSMGMNVPPPPPVMSREEFEARKADLRRKRENERRGE-----RDFSQEREFGRE 438
HRDLA+ MN+ +M R+E EAR A++ RKRENERR E RD R
Sbjct: 581 HRDLAEMGNRMNLQRA--MMGRDEAEARNAEMLRKRENERRPEGGKMFRDGENSRMMMNN 638
Query: 437 ASSVGDVSSMKP 402
+S SS+ P
Sbjct: 639 GTS-ASASSINP 649
>ref|NP_723700.1| CG6686-PA [Drosophila melanogaster] gi|16197967|gb|AAL13754.1|
LD23187p [Drosophila melanogaster]
gi|22946281|gb|AAF53138.2| CG6686-PA [Drosophila
melanogaster]
Length = 970
Score = 39.7 bits (91), Expect = 0.030
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 572 MNVPPPPPVMSREEFEARK-ADLRRKRENERRGERDFSQEREFGREASSVGDVSSMKPKT 396
+ PPPP + E+E+R+ ++ R+R+ +R R+ +ER R S SS KP T
Sbjct: 198 LTAPPPPQISKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPASSSRKPAT 257
>ref|NP_609529.2| CG6686-PB [Drosophila melanogaster] gi|22946280|gb|AAN10790.1|
CG6686-PB [Drosophila melanogaster]
Length = 964
Score = 39.7 bits (91), Expect = 0.030
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 572 MNVPPPPPVMSREEFEARK-ADLRRKRENERRGERDFSQEREFGREASSVGDVSSMKPKT 396
+ PPPP + E+E+R+ ++ R+R+ +R R+ +ER R S SS KP T
Sbjct: 192 LTAPPPPQISKHAEYESRREREIERERDARKRSGRERERERNRERSRSQSPASSSRKPAT 251
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,144,931
Number of Sequences: 1393205
Number of extensions: 12245421
Number of successful extensions: 44249
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 39532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43367
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
