Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000048A_C01 KMC000048A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB70511.1| Myb [Nicotiana tabacum] 112 3e-24
dbj|BAB70510.1| Myb [Nicotiana tabacum] 106 2e-22
ref|NP_195000.1| putative protein; protein id: At4g32740.1 [Arab... 97 1e-19
ref|NP_568249.1| MYB like protein; protein id: At5g11510.1, supp... 89 4e-17
pir||T48510 MYB like protein - Arabidopsis thaliana gi|7573408|e... 65 6e-10
>dbj|BAB70511.1| Myb [Nicotiana tabacum]
Length = 1042
Score = 112 bits (280), Expect = 3e-24
Identities = 63/121 (52%), Positives = 77/121 (63%), Gaps = 4/121 (3%)
Frame = -2
Query: 560 SPRPGTELTIEDFGYLLSPGDRSYDAIGLMKQVSEQTAVQYANAHEILENPTHKALLPRD 381
SPR EL ED +SPGDRSYDAIGLMKQ+SEQTA +A+A E+L T +++L
Sbjct: 922 SPRLDNELNFEDLALFMSPGDRSYDAIGLMKQLSEQTAGAFADAQEVLGGETPESILRGR 981
Query: 380 ASGNDRDEEQENHDPNNQPVERRILDFSECETPGDDKSQ----SSGVTFSSPSSYLLKGC 213
S N + +E + N ERR LDFSEC +PG K +S +FSSPSSYLLKGC
Sbjct: 982 NSKNQKADENHSLLSANVMSERRTLDFSECGSPGKGKETENFCTSNNSFSSPSSYLLKGC 1041
Query: 212 R 210
R
Sbjct: 1042 R 1042
>dbj|BAB70510.1| Myb [Nicotiana tabacum]
Length = 1003
Score = 106 bits (265), Expect = 2e-22
Identities = 62/121 (51%), Positives = 75/121 (61%), Gaps = 4/121 (3%)
Frame = -2
Query: 560 SPRPGTELTIEDFGYLLSPGDRSYDAIGLMKQVSEQTAVQYANAHEILENPTHKALLPRD 381
S R TEL EDF +SPGDRSYDAIGLMKQ+SEQTA A+AH+IL + T + L +
Sbjct: 883 STRYDTELEFEDFALFMSPGDRSYDAIGLMKQLSEQTAPSIADAHQILGSETPETNLSKR 942
Query: 380 ASGNDRDEEQENHDPNNQPVERRILDFSECETPGDDKSQ----SSGVTFSSPSSYLLKGC 213
S + +E +N ERR LDF+EC PG K S+ +FSSPSSYLLK C
Sbjct: 943 NSKKPKADENCTLLASNATSERRTLDFNECGIPGKGKETTKFGSNNNSFSSPSSYLLKYC 1002
Query: 212 R 210
R
Sbjct: 1003 R 1003
>ref|NP_195000.1| putative protein; protein id: At4g32740.1 [Arabidopsis thaliana]
gi|7459226|pir||T04451 hypothetical protein F4D11.60 -
Arabidopsis thaliana gi|3063696|emb|CAA18587.1| putative
protein [Arabidopsis thaliana]
gi|7270221|emb|CAB79991.1| putative protein [Arabidopsis
thaliana]
Length = 235
Score = 97.1 bits (240), Expect = 1e-19
Identities = 54/113 (47%), Positives = 71/113 (62%), Gaps = 6/113 (5%)
Frame = -2
Query: 530 EDFGYLLSPGDRSYDAIGLMKQVSEQTAVQYANAHEILENPTHKALLPRDASGNDRDEEQ 351
+D G +SPG+RSYDAIGLMK +SE +A YA+A E+L N T +++L + ++
Sbjct: 123 QDIGCFMSPGERSYDAIGLMKHLSEHSATAYADALEVLGNDTPESILKKRQLNKSIQGKE 182
Query: 350 ENHDPNNQ-----PVERRILDFSECETPGDDKSQS-SGVTFSSPSSYLLKGCR 210
H P++Q VE R LDFS+C TPG K S S +SSPSSYLLK CR
Sbjct: 183 NQHQPHDQLGNRSQVECRALDFSDCGTPGKAKVPSASPGGYSSPSSYLLKSCR 235
>ref|NP_568249.1| MYB like protein; protein id: At5g11510.1, supported by cDNA:
gi_15375298 [Arabidopsis thaliana]
gi|15375299|gb|AAK54739.2|AF371975_1 putative c-myb-like
transcription factor MYB3R-4 [Arabidopsis thaliana]
Length = 961
Score = 89.0 bits (219), Expect = 4e-17
Identities = 51/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%)
Frame = -2
Query: 560 SPRPGTELTIEDFGYLLSPGDRSYDAIGLMKQVSEQTA--VQYANAHEILENPTHKALLP 387
SPR T+LTIED GY+ SPG+RSY++IG+M Q++E T+ +A+A E+ +PT+
Sbjct: 859 SPRFDTDLTIEDMGYIFSPGERSYESIGVMTQINEHTSAFAAFADAMEVSISPTN----- 913
Query: 386 RDASGNDRDEEQENHDPNNQPVERRILDFSECETPGDDKSQSSGVTFSSPSSYLLKGCR 210
D + ++ ++EN+DP ERR+LDF++CE+P + SSYLLKGCR
Sbjct: 914 -DDARQKKELDKENNDP--LLAERRVLDFNDCESPIKATEE--------VSSYLLKGCR 961
>pir||T48510 MYB like protein - Arabidopsis thaliana gi|7573408|emb|CAB87711.1|
MYB like protein [Arabidopsis thaliana]
Length = 952
Score = 65.1 bits (157), Expect = 6e-10
Identities = 33/77 (42%), Positives = 53/77 (67%), Gaps = 2/77 (2%)
Frame = -2
Query: 560 SPRPGTELTIEDFGYLLSPGDRSYDAIGLMKQVSEQTA--VQYANAHEILENPTHKALLP 387
SPR T+LTIED GY+ SPG+RSY++IG+M Q++E T+ +A+A E+ +PT+
Sbjct: 859 SPRFDTDLTIEDMGYIFSPGERSYESIGVMTQINEHTSAFAAFADAMEVSISPTN----- 913
Query: 386 RDASGNDRDEEQENHDP 336
D + ++ ++EN+DP
Sbjct: 914 -DDARQKKELDKENNDP 929
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,003,320
Number of Sequences: 1393205
Number of extensions: 10255578
Number of successful extensions: 27685
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27622
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
