Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000047A_C01 KMC000047A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568750.1| ATP-dependent Clp protease ATP-binding subunit ... 123 2e-27
gb|AAN78327.1| ATP-dependent Clp protease ATP-binding subunit pr... 114 2e-26
ref|NP_487039.1| endopeptidase Clp ATP-binding chain [Nostoc sp.... 88 2e-19
pir||S71553 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain cl... 92 4e-18
ref|NP_045112.1| Clp protease ATP binding subunit [Cyanidium cal... 92 7e-18
>ref|NP_568750.1| ATP-dependent Clp protease ATP-binding subunit (ClpD), ERD1 protein
precursor; protein id: At5g51070.1, supported by cDNA:
gi_14334877, supported by cDNA: gi_14335169, supported by
cDNA: gi_443696 [Arabidopsis thaliana]
gi|1169544|sp|P42762|ERD1_ARATH ERD1 protein, chloroplast
precursor gi|541859|pir||JN0901 endopeptidase Clp
ATP-binding chain C - Arabidopsis thaliana
gi|497629|dbj|BAA04506.1| ERD1 protein [Arabidopsis
thaliana] gi|14334878|gb|AAK59617.1| putative
ATP-dependent Clp protease ATP-binding subunit ClpD, ERD1
protein precursor [Arabidopsis thaliana]
gi|22136916|gb|AAM91802.1| putative ATP-dependent Clp
protease ATP-binding subunit ClpD, ERD1 protein precursor
[Arabidopsis thaliana]
Length = 945
Score = 123 bits (308), Expect = 2e-27
Identities = 54/84 (64%), Positives = 73/84 (86%)
Frame = -2
Query: 602 IDEIVVFRSLEKSQLLEILDVLLQDVKKRIMSLGIDLEVSESVKNLVCKEGYNPTYGARP 423
IDEIV+FR LEK+Q++EIL+++LQD+K R+++LG+ LEVSE VK L+CK+GY+P YGARP
Sbjct: 828 IDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDPAYGARP 887
Query: 422 LKRAITSLIEDPLSEAFLCGKCKP 351
L+R +T ++EDPLSEAFL G KP
Sbjct: 888 LRRTVTEIVEDPLSEAFLAGSFKP 911
>gb|AAN78327.1| ATP-dependent Clp protease ATP-binding subunit precursor [Oryza
sativa (indica cultivar-group)]
Length = 938
Score = 114 bits (284), Expect(2) = 2e-26
Identities = 53/84 (63%), Positives = 74/84 (88%)
Frame = -2
Query: 602 IDEIVVFRSLEKSQLLEILDVLLQDVKKRIMSLGIDLEVSESVKNLVCKEGYNPTYGARP 423
IDE+VVFR LEK+Q+L ILD++LQ+VK R+++LGI LEVS+++K+L+C+EGY+ +YGARP
Sbjct: 822 IDEMVVFRPLEKTQMLAILDIILQEVKGRLLALGIGLEVSDAMKDLICEEGYDKSYGARP 881
Query: 422 LKRAITSLIEDPLSEAFLCGKCKP 351
L+RA+T LIED +SEA L G+ KP
Sbjct: 882 LRRAVTHLIEDVISEAILFGEYKP 905
Score = 26.9 bits (58), Expect(2) = 2e-26
Identities = 10/28 (35%), Positives = 20/28 (70%)
Frame = -3
Query: 349 GDTVLIDLDVNGNLLVTNQLDRIVNLSE 266
GDT+L+D+D G +++ +++V LS+
Sbjct: 906 GDTILMDIDAAGKPCMSHLNEKVVQLSD 933
>ref|NP_487039.1| endopeptidase Clp ATP-binding chain [Nostoc sp. PCC 7120]
gi|25289939|pir||AH2180 endopeptidase Clp ATP-binding
chain [imported] - Nostoc sp. (strain PCC 7120)
gi|17132093|dbj|BAB74698.1| endopeptidase Clp
ATP-binding chain [Nostoc sp. PCC 7120]
Length = 839
Score = 87.8 bits (216), Expect(2) = 2e-19
Identities = 42/83 (50%), Positives = 60/83 (71%)
Frame = -2
Query: 602 IDEIVVFRSLEKSQLLEILDVLLQDVKKRIMSLGIDLEVSESVKNLVCKEGYNPTYGARP 423
+DEI+VFR L K ++ EI D++L++V R+ GI LEVS+ K + +EGY+P+YGARP
Sbjct: 725 LDEIIVFRQLSKLEVTEIADIMLKEVFGRLTEKGITLEVSDRFKGRLIEEGYSPSYGARP 784
Query: 422 LKRAITSLIEDPLSEAFLCGKCK 354
L+RAI L+ED L+E L G+ K
Sbjct: 785 LRRAIMRLLEDSLAEEILSGRIK 807
Score = 29.6 bits (65), Expect(2) = 2e-19
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -3
Query: 349 GDTVLIDLDVNGNLLVTNQLDR 284
GD LID+D NGN+ VT+Q R
Sbjct: 809 GDVALIDIDENGNVQVTSQQRR 830
>pir||S71553 endopeptidase Clp (EC 3.4.21.-) ATP-binding chain clpC [similarity]
- Synechococcus sp. (strain PCC 7942)
gi|755163|gb|AAB67745.1| ClpC
Length = 839
Score = 92.4 bits (228), Expect = 4e-18
Identities = 43/83 (51%), Positives = 62/83 (73%)
Frame = -2
Query: 602 IDEIVVFRSLEKSQLLEILDVLLQDVKKRIMSLGIDLEVSESVKNLVCKEGYNPTYGARP 423
+DEI+VFR L K ++ EI D++L++V R++ GI L V+E K+ + +EGYNP+YGARP
Sbjct: 726 LDEIIVFRQLNKEEVKEIADIMLREVFGRMLEKGISLSVTEKFKDRLVEEGYNPSYGARP 785
Query: 422 LKRAITSLIEDPLSEAFLCGKCK 354
L+RAI L+ED L+E FL GK +
Sbjct: 786 LRRAIMRLLEDSLAEEFLSGKLR 808
>ref|NP_045112.1| Clp protease ATP binding subunit [Cyanidium caldarium]
gi|14194537|sp|Q9TM05|CLPC_CYACA ATP-dependent clp
protease ATP-binding subunit clpA homolog
gi|6466400|gb|AAF12982.1|AF022186_105 unknown; Clp
protease ATP binding subunit [Cyanidium caldarium]
Length = 854
Score = 91.7 bits (226), Expect = 7e-18
Identities = 41/83 (49%), Positives = 62/83 (74%)
Frame = -2
Query: 602 IDEIVVFRSLEKSQLLEILDVLLQDVKKRIMSLGIDLEVSESVKNLVCKEGYNPTYGARP 423
+DEI+VFR L K ++ +I ++L+++ +R+ GI L+V+E KNL+ +EGYNP+YGARP
Sbjct: 742 VDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPSYGARP 801
Query: 422 LKRAITSLIEDPLSEAFLCGKCK 354
L+RA+ L+ED L+E L GK K
Sbjct: 802 LRRALVRLLEDSLAEEVLSGKIK 824
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,604,727
Number of Sequences: 1393205
Number of extensions: 9392199
Number of successful extensions: 21206
Number of sequences better than 10.0: 401
Number of HSP's better than 10.0 without gapping: 20665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21193
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
