Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000046A_C01 KMC000046A_c01
(916 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA98791.1| Gallus gallus vitellogenin 37 0.32
pir||VJCH2 vitellogenin II precursor [validated] - chicken gi|21... 37 0.32
sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitellogen... 37 0.32
ref|ZP_00065776.1| hypothetical protein [Microbulbifer degradans... 36 0.93
gb|AAO50987.1| hypothetical protein [Dictyostelium discoideum] 35 1.2
>gb|AAA98791.1| Gallus gallus vitellogenin
Length = 247
Score = 37.4 bits (85), Expect = 0.32
Identities = 25/68 (36%), Positives = 43/68 (62%)
Frame = +1
Query: 454 NTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENISLLAR 633
++ S+ S + RS+ +S+ N S+RSSS+SSSSSSSS + S S S+S++ S ++
Sbjct: 78 SSRSSKSSNSSKRSSSKSS---NSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSK 134
Query: 634 LGPAAVRT 657
++ R+
Sbjct: 135 SSSSSSRS 142
Score = 35.4 bits (80), Expect = 1.2
Identities = 23/58 (39%), Positives = 35/58 (59%)
Frame = +1
Query: 448 KKNTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENIS 621
K+++ S S + RS+ S+ + S+ SSS+S SSSSSS ++S S SSS + S
Sbjct: 100 KRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSS 157
Score = 33.1 bits (74), Expect = 6.0
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +1
Query: 454 NTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENIS 621
++ S+ S + +S+ S+ + S+ SSS+SSSSSSSS S S SSS++ S
Sbjct: 122 SSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSSSRSSSSSSKSSS 177
>pir||VJCH2 vitellogenin II precursor [validated] - chicken
gi|212881|gb|AAA49139.1| vitellogenin
Length = 1852
Score = 37.4 bits (85), Expect = 0.32
Identities = 25/68 (36%), Positives = 43/68 (62%)
Frame = +1
Query: 454 NTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENISLLAR 633
++ S+ S + RS+ +S+ N S+RSSS+SSSSSSSS + S S S+S++ S ++
Sbjct: 1171 SSRSSKSSNSSKRSSSKSS---NSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSK 1227
Query: 634 LGPAAVRT 657
++ R+
Sbjct: 1228 SSSSSSRS 1235
Score = 35.4 bits (80), Expect = 1.2
Identities = 23/58 (39%), Positives = 35/58 (59%)
Frame = +1
Query: 448 KKNTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENIS 621
K+++ S S + RS+ S+ + S+ SSS+S SSSSSS ++S S SSS + S
Sbjct: 1193 KRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSS 1250
Score = 33.1 bits (74), Expect = 6.0
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +1
Query: 454 NTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENIS 621
++ S+ S + +S+ S+ + S+ SSS+SSSSSSSS S S SSS++ S
Sbjct: 1215 SSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSSSRSSSSSSKSSS 1270
>sp|P02845|VIT2_CHICK Vitellogenin II precursor (Major vitellogenin) [Contains:
Lipovitellin I (LVI); Phosvitin (PV); Lipovitellin II
(LVII); YGP40] gi|63887|emb|CAA31942.1| vitellogenin
[Gallus gallus]
Length = 1850
Score = 37.4 bits (85), Expect = 0.32
Identities = 25/68 (36%), Positives = 43/68 (62%)
Frame = +1
Query: 454 NTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENISLLAR 633
++ S+ S + RS+ +S+ N S+RSSS+SSSSSSSS + S S S+S++ S ++
Sbjct: 1169 SSRSSKSSNSSKRSSSKSS---NSSKRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSK 1225
Query: 634 LGPAAVRT 657
++ R+
Sbjct: 1226 SSSSSSRS 1233
Score = 35.4 bits (80), Expect = 1.2
Identities = 23/58 (39%), Positives = 35/58 (59%)
Frame = +1
Query: 448 KKNTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENIS 621
K+++ S S + RS+ S+ + S+ SSS+S SSSSSS ++S S SSS + S
Sbjct: 1191 KRSSSSSSSSSSSSRSSSSSSSSSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSS 1248
Score = 33.1 bits (74), Expect = 6.0
Identities = 22/56 (39%), Positives = 34/56 (60%)
Frame = +1
Query: 454 NTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENIS 621
++ S+ S + +S+ S+ + S+ SSS+SSSSSSSS S S SSS++ S
Sbjct: 1213 SSSNSKSSSSSSKSSSSSSRSRSSSKSSSSSSSSSSSSSSKSSSSRSSSSSSKSSS 1268
>ref|ZP_00065776.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 867
Score = 35.8 bits (81), Expect = 0.93
Identities = 24/60 (40%), Positives = 33/60 (55%)
Frame = +1
Query: 442 IVKKNTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENIS 621
I + E G+G ++ S S+ + S SSS+SSSSSSSS + S S SSS + S
Sbjct: 698 IGRTTCESQSGNGGVINSCGTSSSSSSSSSSSSSSSSSSSSSSSSTSSSSSSSSSSSSSS 757
>gb|AAO50987.1| hypothetical protein [Dictyostelium discoideum]
Length = 1126
Score = 35.4 bits (80), Expect = 1.2
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = +1
Query: 454 NTEQSRGSGALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSS 609
NT S S + S+ S+ + S SSS+SSSSSSSS + S + ++ S+S
Sbjct: 373 NTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNIATMTSAS 424
Score = 33.5 bits (75), Expect = 4.6
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +1
Query: 493 SAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISLPSSSENISLLARLGPAAVRT 657
S+ S+ + S SSS+SSSSSSSS + S S SSS NI+ + T
Sbjct: 376 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNIATMTSASTTTTST 430
Score = 33.5 bits (75), Expect = 4.6
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Frame = +1
Query: 436 PIIVKKNTEQSRGS------GALMRSAMRSTFQINCSQRSSSTSSSSSSSSLTKSIVISL 597
PI+ K T S +L + S+ + S SSS+SSSSSSSS + S S
Sbjct: 348 PIVELKKTSSWMSSFFTKVLPSLSTNTSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 407
Query: 598 PSSSENISLLARLGPAAVRT 657
SSS + S +A + A+ T
Sbjct: 408 SSSSSSSSNIATMTSASTTT 427
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 758,791,915
Number of Sequences: 1393205
Number of extensions: 16706964
Number of successful extensions: 87749
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 50390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69472
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 50195830792
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
