Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000045A_C01 KMC000045A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB01236.1| gene_id:MDJ14.23~unknown protein [Arabidopsis th... 116 3e-25
ref|NP_566803.1| expressed protein; protein id: At3g26890.1 [Ara... 116 3e-25
ref|NP_198927.1| unknown protein; protein id: At5g41110.1 [Arabi... 105 5e-22
pir||T33124 hypothetical protein B0511.1 - Caenorhabditis elegans 35 0.83
ref|NP_492792.1| FK506 Binding protein family FKB-7 (36.2 kD) (f... 35 0.83
>dbj|BAB01236.1| gene_id:MDJ14.23~unknown protein [Arabidopsis thaliana]
Length = 724
Score = 116 bits (290), Expect = 3e-25
Identities = 59/119 (49%), Positives = 79/119 (65%), Gaps = 7/119 (5%)
Frame = -1
Query: 600 ERNDRKGCW--DKTCDESGKSLNSCSKV-----KENSNIVGPLRYALHLRFICPFPKRTN 442
+ D++ C D G L+ K+ KE + G LRYALHLRF+CP PK+++
Sbjct: 603 KHGDKESCEGSDSVDSVEGDVLHESGKICLKPSKECNGGSGALRYALHLRFLCPLPKKSS 662
Query: 441 RSVQKCRYNSVPEKAGLDIEGERKFYLCNDLRVVFPQRHTDADEGKLNVEYHFPEDPRY 265
+ ++ S +K LD +G+R+FYL NDLRVVFPQRHTD+DEGKLNVEYH+PE+PRY
Sbjct: 663 KKSEETE--STGQKKNLDSDGKRRFYLYNDLRVVFPQRHTDSDEGKLNVEYHYPENPRY 719
>ref|NP_566803.1| expressed protein; protein id: At3g26890.1 [Arabidopsis thaliana]
gi|15293103|gb|AAK93662.1| unknown protein [Arabidopsis
thaliana] gi|21436343|gb|AAM51341.1| unknown protein
[Arabidopsis thaliana]
Length = 649
Score = 116 bits (290), Expect = 3e-25
Identities = 59/119 (49%), Positives = 79/119 (65%), Gaps = 7/119 (5%)
Frame = -1
Query: 600 ERNDRKGCW--DKTCDESGKSLNSCSKV-----KENSNIVGPLRYALHLRFICPFPKRTN 442
+ D++ C D G L+ K+ KE + G LRYALHLRF+CP PK+++
Sbjct: 528 KHGDKESCEGSDSVDSVEGDVLHESGKICLKPSKECNGGSGALRYALHLRFLCPLPKKSS 587
Query: 441 RSVQKCRYNSVPEKAGLDIEGERKFYLCNDLRVVFPQRHTDADEGKLNVEYHFPEDPRY 265
+ ++ S +K LD +G+R+FYL NDLRVVFPQRHTD+DEGKLNVEYH+PE+PRY
Sbjct: 588 KKSEETE--STGQKKNLDSDGKRRFYLYNDLRVVFPQRHTDSDEGKLNVEYHYPENPRY 644
>ref|NP_198927.1| unknown protein; protein id: At5g41110.1 [Arabidopsis thaliana]
gi|9759157|dbj|BAB09713.1| gene_id:MEE6.18~unknown
protein [Arabidopsis thaliana]
Length = 621
Score = 105 bits (262), Expect = 5e-22
Identities = 58/106 (54%), Positives = 71/106 (66%), Gaps = 1/106 (0%)
Frame = -1
Query: 579 CWDKTCDESGKSLNS-CSKVKENSNIVGPLRYALHLRFICPFPKRTNRSVQKCRYNSVPE 403
C +K C E+ + CSK G LRYALHL+FICP K+ ++ QK +
Sbjct: 527 CGNKNCRETYRETGQRCSKS-------GVLRYALHLKFICPLRKKASKLGQKKSLD---- 575
Query: 402 KAGLDIEGERKFYLCNDLRVVFPQRHTDADEGKLNVEYHFPEDPRY 265
AG D GER+FYL N+LRVVFPQRHTD+DEGKLNVEYH+PE+PRY
Sbjct: 576 -AGDD--GERRFYLYNELRVVFPQRHTDSDEGKLNVEYHYPENPRY 618
>pir||T33124 hypothetical protein B0511.1 - Caenorhabditis elegans
Length = 360
Score = 35.0 bits (79), Expect = 0.83
Identities = 14/44 (31%), Positives = 27/44 (60%)
Frame = +3
Query: 267 ILDLQGNGIPRSTFPHQHLYDVEETQPLNHYISRIYVPLLCPIQ 398
+++++G G P S+ +HL +++ PL+ I + +VP CP Q
Sbjct: 88 VIEIRGEGAPMSSAQIRHLEEMDNGGPLDIKIEKTFVPAKCPQQ 131
>ref|NP_492792.1| FK506 Binding protein family FKB-7 (36.2 kD) (fkb-7)
[Caenorhabditis elegans] gi|15375226|gb|AAC17657.2|
Fk506-binding protein family protein 7 [Caenorhabditis
elegans]
Length = 318
Score = 35.0 bits (79), Expect = 0.83
Identities = 14/44 (31%), Positives = 27/44 (60%)
Frame = +3
Query: 267 ILDLQGNGIPRSTFPHQHLYDVEETQPLNHYISRIYVPLLCPIQ 398
+++++G G P S+ +HL +++ PL+ I + +VP CP Q
Sbjct: 46 VIEIRGEGAPMSSAQIRHLEEMDNGGPLDIKIEKTFVPAKCPQQ 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,939,810
Number of Sequences: 1393205
Number of extensions: 11609044
Number of successful extensions: 25270
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25255
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
