Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000044A_C02 KMC000044A_c02
(725 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB17749.1| putative coatmer beta subunit (beta-coat protein... 156 3e-45
ref|NP_194876.1| putative protein; protein id: At4g31480.1 [Arab... 154 1e-44
ref|NP_194877.1| Beta-COP-like protein; protein id: At4g31490.1 ... 150 2e-43
ref|NP_203534.1| coatomer protein complex, subunit beta 1; RIKEN... 120 2e-31
ref|NP_542959.1| coatomer protein complex, subunit beta 1 [Rattu... 120 2e-31
>dbj|BAB17749.1| putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza
sativa (japonica cultivar-group)]
gi|13873019|dbj|BAB44123.1| putative coatmer beta subunit
(beta-coat protein) (beta-COP) [Oryza sativa (japonica
cultivar-group)]
Length = 1036
Score = 156 bits (394), Expect(2) = 3e-45
Identities = 72/83 (86%), Positives = 79/83 (94%)
Frame = -2
Query: 724 FRTMWXEFEWENKVAVNTVLQDERDFLSHIIKSTNMKCLTPPSALEGDCGFLAANLYAKS 545
FR MW EFEWENKVAVNTV+Q+E++FL HIIKSTNMKCLTPPSAL+G+CGFLAANLYAKS
Sbjct: 928 FRNMWAEFEWENKVAVNTVIQNEKEFLDHIIKSTNMKCLTPPSALDGECGFLAANLYAKS 987
Query: 544 VFGEDALVNVSIEKQADGKLSGY 476
VFGEDALVN+SIEKQ DGKLSGY
Sbjct: 988 VFGEDALVNISIEKQFDGKLSGY 1010
Score = 48.1 bits (113), Expect(2) = 3e-45
Identities = 23/26 (88%), Positives = 25/26 (95%)
Frame = -3
Query: 474 LRIRSKTQGIALSLGDKITLKQKGAA 397
+RIRSKTQGIALSLGDKITLKQKG +
Sbjct: 1011 IRIRSKTQGIALSLGDKITLKQKGGS 1036
>ref|NP_194876.1| putative protein; protein id: At4g31480.1 [Arabidopsis thaliana]
gi|7447850|pir||T10678 hypothetical protein F3L17.50 -
Arabidopsis thaliana gi|5262759|emb|CAB45907.1| putative
protein [Arabidopsis thaliana] gi|7270051|emb|CAB79866.1|
putative protein [Arabidopsis thaliana]
Length = 971
Score = 154 bits (388), Expect(2) = 1e-44
Identities = 72/83 (86%), Positives = 77/83 (92%)
Frame = -2
Query: 724 FRTMWXEFEWENKVAVNTVLQDERDFLSHIIKSTNMKCLTPPSALEGDCGFLAANLYAKS 545
FRTMW EFEWENKVAVNT +Q+ER+FL HIIKSTNMKCLT PSA+EG+CGFLAANLYAKS
Sbjct: 863 FRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIEGECGFLAANLYAKS 922
Query: 544 VFGEDALVNVSIEKQADGKLSGY 476
VFGEDALVNVSIEKQ DG LSGY
Sbjct: 923 VFGEDALVNVSIEKQTDGALSGY 945
Score = 48.5 bits (114), Expect(2) = 1e-44
Identities = 23/26 (88%), Positives = 26/26 (99%)
Frame = -3
Query: 474 LRIRSKTQGIALSLGDKITLKQKGAA 397
+RIRSKTQGIALSLGDKITLKQKG++
Sbjct: 946 IRIRSKTQGIALSLGDKITLKQKGSS 971
>ref|NP_194877.1| Beta-COP-like protein; protein id: At4g31490.1 [Arabidopsis thaliana]
gi|7447851|pir||T10679 hypothetical protein F3L17.60 -
Arabidopsis thaliana gi|5262760|emb|CAB45908.1|
Beta-COP-like protein [Arabidopsis thaliana]
gi|7270052|emb|CAB79867.1| Beta-COP-like protein
[Arabidopsis thaliana]
Length = 958
Score = 150 bits (379), Expect(2) = 2e-43
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = -2
Query: 724 FRTMWXEFEWENKVAVNTVLQDERDFLSHIIKSTNMKCLTPPSALEGDCGFLAANLYAKS 545
FRTMW EFEWENKVAVNT +Q+ER+FL HIIKSTNMKCLT PSA+ G+CGFLAANLYAKS
Sbjct: 850 FRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIAGECGFLAANLYAKS 909
Query: 544 VFGEDALVNVSIEKQADGKLSGY 476
VFGEDALVN+SIEKQ DG LSGY
Sbjct: 910 VFGEDALVNLSIEKQTDGTLSGY 932
Score = 48.1 bits (113), Expect(2) = 2e-43
Identities = 23/26 (88%), Positives = 25/26 (95%)
Frame = -3
Query: 474 LRIRSKTQGIALSLGDKITLKQKGAA 397
+RIRSKTQGIALSLGDKITLKQKG +
Sbjct: 933 IRIRSKTQGIALSLGDKITLKQKGGS 958
>ref|NP_203534.1| coatomer protein complex, subunit beta 1; RIKEN cDNA 2610019B04 gene
[Mus musculus] gi|13124070|sp|Q9JIF7|COPB_MOUSE Coatomer
beta subunit (Beta-coat protein) (Beta-COP)
gi|8571380|gb|AAF76856.1|AF231925_1 COPI coatomer
complex, beta subunit [Mus musculus]
gi|21410372|gb|AAH30837.1| coatomer protein complex,
subunit beta 1 [Mus musculus]
Length = 953
Score = 120 bits (301), Expect(2) = 2e-31
Identities = 55/74 (74%), Positives = 61/74 (82%)
Frame = -2
Query: 724 FRTMWXEFEWENKVAVNTVLQDERDFLSHIIKSTNMKCLTPPSALEGDCGFLAANLYAKS 545
FR MW EFEWENKV VNT + D D+L HI+KSTNMKCLTP AL G CGF+AANLYA+S
Sbjct: 840 FRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARS 899
Query: 544 VFGEDALVNVSIEK 503
+FGEDAL NVSIEK
Sbjct: 900 IFGEDALANVSIEK 913
Score = 37.7 bits (86), Expect(2) = 2e-31
Identities = 17/23 (73%), Positives = 21/23 (90%)
Frame = -3
Query: 474 LRIRSKTQGIALSLGDKITLKQK 406
+RIR+K+QG+ALSLGDKI L QK
Sbjct: 927 IRIRAKSQGMALSLGDKINLSQK 949
>ref|NP_542959.1| coatomer protein complex, subunit beta 1 [Rattus norvegicus]
gi|116923|sp|P23514|COPB_RAT COATOMER BETA SUBUNIT
(BETA-COAT PROTEIN) (BETA-COP) gi|111414|pir||S13520 coat
protein beta chain, Golgi-derived - rat
gi|55819|emb|CAA40505.1| beta COP [Rattus norvegicus]
Length = 953
Score = 120 bits (300), Expect(2) = 2e-31
Identities = 55/74 (74%), Positives = 61/74 (82%)
Frame = -2
Query: 724 FRTMWXEFEWENKVAVNTVLQDERDFLSHIIKSTNMKCLTPPSALEGDCGFLAANLYAKS 545
FR MW EFEWENKV VNT + D D+L HI+KSTNMKCLTP AL G CGF+AANLYA+S
Sbjct: 840 FRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARS 899
Query: 544 VFGEDALVNVSIEK 503
+FGEDAL NVSIEK
Sbjct: 900 IFGEDALANVSIEK 913
Score = 37.7 bits (86), Expect(2) = 2e-31
Identities = 17/23 (73%), Positives = 21/23 (90%)
Frame = -3
Query: 474 LRIRSKTQGIALSLGDKITLKQK 406
+RIR+K+QG+ALSLGDKI L QK
Sbjct: 927 IRIRAKSQGMALSLGDKINLSQK 949
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 612,272,339
Number of Sequences: 1393205
Number of extensions: 13179777
Number of successful extensions: 30119
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 28995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30110
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
