Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000043A_C01 KMC000043A_c01
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD20320.1| putative Na/H antiporter [Cymodocea nodosa] 44 0.003
ref|NP_178307.2| putative Na+/H+ antiporter; protein id: At2g019... 35 1.2
pir||E84431 probable Na+/H+ antiporter [imported] - Arabidopsis ... 35 1.2
ref|NP_006314.1| SEC24 (S. cerevisiae) homolog B; secretory prot... 34 1.5
dbj|BAC42528.1| putative deaminase [Arabidopsis thaliana] 34 1.5
>emb|CAD20320.1| putative Na/H antiporter [Cymodocea nodosa]
Length = 1145
Score = 43.5 bits (101), Expect = 0.003
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Frame = -3
Query: 565 PLTSVKSEGAATDQKGHQVTRFNQDVTNPPPQSTERREHHR---DDSSDDSAVEEDIIVR 395
PL S +SEG + ++ Q R + PPP+ + D+SSD+S EE+IIVR
Sbjct: 1079 PLVSTRSEGESLGKRLGQ--REKPKLLPPPPKPVTGASESKPAEDNSSDESGAEEEIIVR 1136
Query: 394 VDSPS 380
+DSPS
Sbjct: 1137 IDSPS 1141
>ref|NP_178307.2| putative Na+/H+ antiporter; protein id: At2g01980.1, supported by
cDNA: gi_17065339 [Arabidopsis thaliana]
gi|8515714|gb|AAF76139.1|AF256224_1 putative Na+/H+
antiporter SOS1 [Arabidopsis thaliana]
gi|17065340|gb|AAL32824.1| putative Na+/H+ antiporter
[Arabidopsis thaliana]
Length = 1146
Score = 34.7 bits (78), Expect = 1.2
Identities = 23/79 (29%), Positives = 38/79 (47%)
Frame = -3
Query: 604 SLSYPNMASYQDRPLTSVKSEGAATDQKGHQVTRFNQDVTNPPPQSTERREHHRDDSSDD 425
+L Y + + L S KSE + +K Q+ P + R++ +SSD+
Sbjct: 1066 NLLYKKLPLNPAQGLVSAKSESSIVTKK--QLETRKHACQLPLKGESSTRQNTMVESSDE 1123
Query: 424 SAVEEDIIVRVDSPSTLSF 368
+E I+VR+DSPS + F
Sbjct: 1124 EDEDEGIVVRIDSPSKIVF 1142
>pir||E84431 probable Na+/H+ antiporter [imported] - Arabidopsis thaliana
gi|4406781|gb|AAD20091.1| putative Na+/H+ antiporter
[Arabidopsis thaliana]
Length = 1162
Score = 34.7 bits (78), Expect = 1.2
Identities = 23/79 (29%), Positives = 38/79 (47%)
Frame = -3
Query: 604 SLSYPNMASYQDRPLTSVKSEGAATDQKGHQVTRFNQDVTNPPPQSTERREHHRDDSSDD 425
+L Y + + L S KSE + +K Q+ P + R++ +SSD+
Sbjct: 1082 NLLYKKLPLNPAQGLVSAKSESSIVTKK--QLETRKHACQLPLKGESSTRQNTMVESSDE 1139
Query: 424 SAVEEDIIVRVDSPSTLSF 368
+E I+VR+DSPS + F
Sbjct: 1140 EDEDEGIVVRIDSPSKIVF 1158
>ref|NP_006314.1| SEC24 (S. cerevisiae) homolog B; secretory protein 24;
Sec24-related protein B; protein transport protein
Sec24B [Homo sapiens] gi|13124510|sp|O95487|S24B_HUMAN
Protein transport protein Sec24B (SEC24-related protein
B) gi|3947690|emb|CAA10335.1| Sec24B protein [Homo
sapiens]
Length = 1268
Score = 34.3 bits (77), Expect = 1.5
Identities = 22/83 (26%), Positives = 36/83 (42%), Gaps = 2/83 (2%)
Frame = -3
Query: 592 PNMASYQDRPLTSVKSEGAATDQKGHQVTRF--NQDVTNPPPQSTERREHHRDDSSDDSA 419
P A++ P+TSV QKG Q + NQ + P P S+ + ++ +++
Sbjct: 330 PPTANHPVEPVTSVTQPSELLQQKGVQYGEYVNNQASSAPTPLSSTSDDEEEEEEDEEAG 389
Query: 418 VEEDIIVRVDSPSTLSFPHL*GG 350
V+ SP S+ L GG
Sbjct: 390 VDSSSTTSSASPMPNSYDALEGG 412
>dbj|BAC42528.1| putative deaminase [Arabidopsis thaliana]
Length = 1307
Score = 34.3 bits (77), Expect = 1.5
Identities = 19/59 (32%), Positives = 29/59 (48%)
Frame = -3
Query: 622 RPPPPQSLSYPNMASYQDRPLTSVKSEGAATDQKGHQVTRFNQDVTNPPPQSTERREHH 446
+PPPP +P M + ++SE A T Q+ Q+ R +D + PP T+ HH
Sbjct: 1236 KPPPPVHPFHPKMTIRRG----VLESECAQTMQQFFQLRRKKKDKNSDPPTPTDHHHHH 1290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,098,153
Number of Sequences: 1393205
Number of extensions: 12428486
Number of successful extensions: 40170
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 37996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40059
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
