Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000042A_C01 KMC000042A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176910.1| ribosomal protein, putative; protein id: At1g67... 235 5e-61
gb|AAF99734.1|AC004557_13 F17L21.19 [Arabidopsis thaliana] 234 6e-61
ref|NP_174060.1| putative 60S ribosomal protein L17; protein id:... 234 6e-61
gb|AAL09401.1|AF307336_1 ribosomal protein [Petunia x hybrida] 230 2e-59
gb|AAG49551.1|AF264022_1 ribosomal protein L17-1 [Poa secunda] 228 8e-59
>ref|NP_176910.1| ribosomal protein, putative; protein id: At1g67430.1, supported by
cDNA: gi_14596148, supported by cDNA: gi_20148390
[Arabidopsis thaliana] gi|27735241|sp|P51413|R172_ARATH
60S ribosomal protein L17-2 gi|7440980|pir||T02163
ribosomal protein L17, cytosolic - Arabidopsis thaliana
gi|3176668|gb|AAC18792.1|AAC18792 Similar to ribosomal
protein L17 gb|X62724 from Hordeum vulgare. ESTs
gb|Z34728, gb|F19974, gb|T75677 and gb|Z33937 come from
this gene. [Arabidopsis thaliana]
gi|14596149|gb|AAK68802.1| ribosomal protein L17-like
protein [Arabidopsis thaliana]
gi|20148391|gb|AAM10086.1| unknown protein [Arabidopsis
thaliana]
Length = 175
Score = 235 bits (599), Expect = 5e-61
Identities = 115/126 (91%), Positives = 122/126 (96%), Gaps = 1/126 (0%)
Frame = -1
Query: 679 LEDVLAHKQAIPFRRFCRGXGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKG 500
LEDV+AHKQAIPF RFCRG GRTAQAKNRHSNGQGRWPAKSA+F+LDLLKNAESNAEVKG
Sbjct: 48 LEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKG 107
Query: 499 LDVDALYITHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 320
LDVDAL+I+H+QVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA
Sbjct: 108 LDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA 167
Query: 319 A-SKKS 305
A SKKS
Sbjct: 168 AKSKKS 173
>gb|AAF99734.1|AC004557_13 F17L21.19 [Arabidopsis thaliana]
Length = 172
Score = 234 bits (598), Expect = 6e-61
Identities = 112/124 (90%), Positives = 119/124 (95%)
Frame = -1
Query: 679 LEDVLAHKQAIPFRRFCRGXGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKG 500
LEDV+AHKQAIPF RFCRG GRTAQAKNRHSNGQGRWPAKSA+F+LDLLKNAESNAEVKG
Sbjct: 44 LEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKG 103
Query: 499 LDVDALYITHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 320
LDVDAL+I+H+QVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA
Sbjct: 104 LDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA 163
Query: 319 ASKK 308
A K
Sbjct: 164 AKSK 167
>ref|NP_174060.1| putative 60S ribosomal protein L17; protein id: At1g27400.1,
supported by cDNA: 749., supported by cDNA: gi_14335139,
supported by cDNA: gi_16226208, supported by cDNA:
gi_16226629, supported by cDNA: gi_18655346 [Arabidopsis
thaliana] gi|27734446|sp|Q93VI3|R171_ARATH 60S ribosomal
protein L17-1 gi|14335140|gb|AAK59850.1|
At1g27400/F17L21_20 [Arabidopsis thaliana]
gi|16226209|gb|AAL16103.1|AF428271_1 At1g27400/F17L21_20
[Arabidopsis thaliana]
gi|16226630|gb|AAL16218.1|AF428449_1 At1g27400/F17L21_20
[Arabidopsis thaliana] gi|18655347|gb|AAL76129.1|
At1g27400/F17L21_20 [Arabidopsis thaliana]
gi|21594923|gb|AAM66056.1| putative 60S ribosomal
protein L17 [Arabidopsis thaliana]
Length = 176
Score = 234 bits (598), Expect = 6e-61
Identities = 112/124 (90%), Positives = 119/124 (95%)
Frame = -1
Query: 679 LEDVLAHKQAIPFRRFCRGXGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKG 500
LEDV+AHKQAIPF RFCRG GRTAQAKNRHSNGQGRWPAKSA+F+LDLLKNAESNAEVKG
Sbjct: 48 LEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKG 107
Query: 499 LDVDALYITHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 320
LDVDAL+I+H+QVNQA KQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKEPETQLA
Sbjct: 108 LDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA 167
Query: 319 ASKK 308
A K
Sbjct: 168 AKSK 171
>gb|AAL09401.1|AF307336_1 ribosomal protein [Petunia x hybrida]
Length = 175
Score = 230 bits (586), Expect = 2e-59
Identities = 111/123 (90%), Positives = 116/123 (94%)
Frame = -1
Query: 679 LEDVLAHKQAIPFRRFCRGXGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKG 500
LEDVLAHKQAIPF RFCRG GRTAQAKNRHSNGQGRWP KSA FILDLLKNAESNAEVKG
Sbjct: 48 LEDVLAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPVKSANFILDLLKNAESNAEVKG 107
Query: 499 LDVDALYITHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 320
LDVD+LYI+H+QVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEE V+KEPETQLA
Sbjct: 108 LDVDSLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEESVRKEPETQLA 167
Query: 319 ASK 311
K
Sbjct: 168 PRK 170
>gb|AAG49551.1|AF264022_1 ribosomal protein L17-1 [Poa secunda]
Length = 171
Score = 228 bits (580), Expect = 8e-59
Identities = 109/123 (88%), Positives = 117/123 (94%)
Frame = -1
Query: 679 LEDVLAHKQAIPFRRFCRGXGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKG 500
LEDVLAHKQAIPFRR+CRG GRTAQAKNR NGQGRWPAKSA+F+LDLLKNAESNAEVKG
Sbjct: 48 LEDVLAHKQAIPFRRYCRGVGRTAQAKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKG 107
Query: 499 LDVDALYITHVQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLA 320
LDVDALYI+H+QVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSEKEEPVKKE E+Q+A
Sbjct: 108 LDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEAESQIA 167
Query: 319 ASK 311
K
Sbjct: 168 PRK 170
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,040,841
Number of Sequences: 1393205
Number of extensions: 10889384
Number of successful extensions: 28732
Number of sequences better than 10.0: 259
Number of HSP's better than 10.0 without gapping: 27791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28638
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
