Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000041A_C02 KMC000041A_c02
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD44620.1| MYB28 protein [Oryza sativa (japonica cultivar-g... 75 8e-13
dbj|BAB92342.1| histone H1-like protein [Oryza sativa (japonica ... 75 8e-13
pir||T15038 DNA-binding protein MYB1 - parsley gi|2224899|gb|AAB... 75 1e-12
pir||T15037 DNA-binding protein MYB1 - parsley gi|2224897|gb|AAB... 75 1e-12
gb|AAL73044.1|AF461815_1 histone H1-like protein [Zea mays] 68 1e-10
>emb|CAD44620.1| MYB28 protein [Oryza sativa (japonica cultivar-group)]
Length = 304
Score = 75.1 bits (183), Expect = 8e-13
Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Frame = -2
Query: 663 LGAXLRKLDHQWKLEKVQNCYKIKKG----TPSGQRLPSPKSPVP*PKDLRPQRSPTSIF 496
L A LR+L K+EK+ Y+I + + PSPK K L+ ++ S
Sbjct: 156 LTAKLRRLIAAKKIEKIDRSYRITESYAAKVSQANKSPSPKKDPA--KPLKASQNLGSFA 213
Query: 495 VTCDEIIKDVADTAAYRVADAENKSYLAAEAIREVERISRLAEDTDSTLKLVKEIYEKCS 316
T + + A AA +VADAE KS+LA E + E ERI +LAE+T+S + L EIYE+CS
Sbjct: 214 GTSPAL--EAAAAAAMKVADAEAKSHLANEHMTEAERIFKLAEETESLVTLATEIYERCS 271
Query: 315 HGEIVLL 295
GEI+ +
Sbjct: 272 RGEILTI 278
>dbj|BAB92342.1| histone H1-like protein [Oryza sativa (japonica cultivar-group)]
Length = 306
Score = 75.1 bits (183), Expect = 8e-13
Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Frame = -2
Query: 663 LGAXLRKLDHQWKLEKVQNCYKIKKG----TPSGQRLPSPKSPVP*PKDLRPQRSPTSIF 496
L A LR+L K+EK+ Y+I + + PSPK K L+ ++ S
Sbjct: 158 LTAKLRRLIAAKKIEKIDRSYRITESYAAKVSQANKSPSPKKDPA--KPLKASQNLGSFA 215
Query: 495 VTCDEIIKDVADTAAYRVADAENKSYLAAEAIREVERISRLAEDTDSTLKLVKEIYEKCS 316
T + + A AA +VADAE KS+LA E + E ERI +LAE+T+S + L EIYE+CS
Sbjct: 216 GTSPAL--EAAAAAAMKVADAEAKSHLANEHMTEAERIFKLAEETESLVTLATEIYERCS 273
Query: 315 HGEIVLL 295
GEI+ +
Sbjct: 274 RGEILTI 280
>pir||T15038 DNA-binding protein MYB1 - parsley gi|2224899|gb|AAB61699.1|
DNA-binding protein PcMYB1 [Petroselinum crispum]
Length = 307
Score = 74.7 bits (182), Expect = 1e-12
Identities = 44/115 (38%), Positives = 71/115 (61%)
Frame = -2
Query: 663 LGAXLRKLDHQWKLEKVQNCYKIKKGTPSGQRLPSPKSPVP*PKDLRPQRSPTSIFVTCD 484
L + +R+L Q KLEKV+ +KIK SG R+P+P+ +D +P S S+ +
Sbjct: 200 LSSLVRRLTMQKKLEKVEQRFKIKN---SGTRIPTPRQ-----RDAKPGTSRKSVLLD-P 250
Query: 483 EIIKDVADTAAYRVADAENKSYLAAEAIREVERISRLAEDTDSTLKLVKEIYEKC 319
++ A+ R+ADAE+KS +A EA++E E I+ LAE+ +S L++ K I+E+C
Sbjct: 251 ATLEGAVSIASERLADAEHKSCVAIEAVKESENIAELAEEAESMLEIAKGIWEQC 305
>pir||T15037 DNA-binding protein MYB1 - parsley gi|2224897|gb|AAB61698.1|
DNA-binding protein PcMYB1 [Petroselinum crispum]
Length = 307
Score = 74.7 bits (182), Expect = 1e-12
Identities = 44/115 (38%), Positives = 71/115 (61%)
Frame = -2
Query: 663 LGAXLRKLDHQWKLEKVQNCYKIKKGTPSGQRLPSPKSPVP*PKDLRPQRSPTSIFVTCD 484
L + +R+L Q KLEKV+ +KIK SG R+P+P+ +D +P S S+ +
Sbjct: 200 LSSLVRRLTMQKKLEKVEQRFKIKN---SGTRIPTPRQ-----RDAKPGTSRKSVLLD-P 250
Query: 483 EIIKDVADTAAYRVADAENKSYLAAEAIREVERISRLAEDTDSTLKLVKEIYEKC 319
++ A+ R+ADAE+KS +A EA++E E I+ LAE+ +S L++ K I+E+C
Sbjct: 251 ATLEGAVSIASERLADAEHKSCVAIEAVKESENIAELAEEAESMLEIAKGIWEQC 305
>gb|AAL73044.1|AF461815_1 histone H1-like protein [Zea mays]
Length = 288
Score = 68.2 bits (165), Expect = 1e-10
Identities = 45/134 (33%), Positives = 69/134 (50%), Gaps = 5/134 (3%)
Frame = -2
Query: 663 LGAXLRKLDHQWKLEKVQNCYKIKKG----TPSGQRLPSPKSPVP*PKDLRPQRSPTSI- 499
L + LR+L K+EK+ Y++ TP+ +PK P +P + +I
Sbjct: 157 LASKLRRLADSNKIEKIDKSYRLPDSLATRTPAPMNASAPKQKDP----SKPSKVSKAIG 212
Query: 498 FVTCDEIIKDVADTAAYRVADAENKSYLAAEAIREVERISRLAEDTDSTLKLVKEIYEKC 319
+ + A AA +VADAE K++ A + E ERI ++AEDT+S L + EIY++C
Sbjct: 213 LFSASSPALEAAMAAAVKVADAEAKAHDAHDQTMEAERIFKMAEDTESLLIIAAEIYDRC 272
Query: 318 SHGEIVLLA*VGDQ 277
S GEI L V +
Sbjct: 273 SRGEITTLVPVAQR 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 579,059,830
Number of Sequences: 1393205
Number of extensions: 12558054
Number of successful extensions: 31798
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 29969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31701
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
