Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000040A_C01 KMC000040A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA76348.1| protoporphyrinogen IX oxidase [Glycine max] 170 1e-41
sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial (... 142 3e-33
ref|NP_196926.2| protoporphyrinogen oxidase - like protein; prot... 140 1e-32
pir||T48595 protoporphyrinogen oxidase-like protein - Arabidopsi... 140 1e-32
dbj|BAB08301.1| protoporphyrinogen IX oxidase [Arabidopsis thali... 140 1e-32
>dbj|BAA76348.1| protoporphyrinogen IX oxidase [Glycine max]
Length = 502
Score = 170 bits (430), Expect = 1e-41
Identities = 79/90 (87%), Positives = 88/90 (97%)
Frame = -3
Query: 540 SDLRKLLGAEGEPSFVNHFYWSKGFPLYARNYGSVLEAIDKMEKDLPGFFYAGNHRGGLS 361
SDLRKLLGAEGEP+FVNHFYWSKGFPLY RNYGSVL+AIDK+EKDLPGFF+AGN++GGLS
Sbjct: 413 SDLRKLLGAEGEPTFVNHFYWSKGFPLYGRNYGSVLQAIDKIEKDLPGFFFAGNYKGGLS 472
Query: 360 VGKAIASGCKAADLVISYLNNASESIVPDK 271
VGKAIASGCKAADLVISYLN+AS++ VPDK
Sbjct: 473 VGKAIASGCKAADLVISYLNSASDNTVPDK 502
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial (PPO II)
(Protoporphyrinogen IX oxidase isozyme II) (PPX II)
(PX-2) gi|7489194|pir||T04076 protoporphyrinogen oxidase
(EC 1.3.3.4) IX, mitochondrial [validated] - common
tobacco gi|2370335|emb|CAA73866.1| protoporphyrinogen
oxidase [Nicotiana tabacum] gi|3929920|dbj|BAA34712.1|
mitochondrial protoporphyrinogen oxidase [Nicotiana
tabacum] gi|4105188|gb|AAD02291.1| protoporphyrinogen
oxidase PX-2 [Nicotiana tabacum]
Length = 504
Score = 142 bits (358), Expect = 3e-33
Identities = 65/83 (78%), Positives = 74/83 (88%)
Frame = -3
Query: 540 SDLRKLLGAEGEPSFVNHFYWSKGFPLYARNYGSVLEAIDKMEKDLPGFFYAGNHRGGLS 361
SDL++LLGAEGEP++VNH YWSK FPLY NY SVL+AIDKMEK+LPG FYAGNHRGGLS
Sbjct: 415 SDLKQLLGAEGEPTYVNHLYWSKAFPLYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGGLS 474
Query: 360 VGKAIASGCKAADLVISYLNNAS 292
VGKA++SGC AADLVISYL + S
Sbjct: 475 VGKALSSGCNAADLVISYLESVS 497
>ref|NP_196926.2| protoporphyrinogen oxidase - like protein; protein id: At5g14220.1,
supported by cDNA: gi_18700120, supported by cDNA:
gi_20856026 [Arabidopsis thaliana]
gi|18700121|gb|AAL77672.1| AT5g14220/MUA22_22
[Arabidopsis thaliana] gi|20856027|gb|AAM26644.1|
AT5g14220/MUA22_22 [Arabidopsis thaliana]
Length = 508
Score = 140 bits (353), Expect = 1e-32
Identities = 66/89 (74%), Positives = 74/89 (82%)
Frame = -3
Query: 540 SDLRKLLGAEGEPSFVNHFYWSKGFPLYARNYGSVLEAIDKMEKDLPGFFYAGNHRGGLS 361
SDL++LLG EGEP VNH+YW K FPLY +Y SV+EAIDKME DLPGFFYAGNHRGGLS
Sbjct: 417 SDLQRLLGVEGEPVSVNHYYWRKAFPLYDSSYDSVMEAIDKMENDLPGFFYAGNHRGGLS 476
Query: 360 VGKAIASGCKAADLVISYLNNASESIVPD 274
VGK+IASGCKAADLVISYL + S P+
Sbjct: 477 VGKSIASGCKAADLVISYLESCSNDKKPN 505
>pir||T48595 protoporphyrinogen oxidase-like protein - Arabidopsis thaliana
gi|7573447|emb|CAB87761.1| protoporphyrinogen
oxidase-like protein [Arabidopsis thaliana]
Length = 501
Score = 140 bits (353), Expect = 1e-32
Identities = 66/89 (74%), Positives = 74/89 (82%)
Frame = -3
Query: 540 SDLRKLLGAEGEPSFVNHFYWSKGFPLYARNYGSVLEAIDKMEKDLPGFFYAGNHRGGLS 361
SDL++LLG EGEP VNH+YW K FPLY +Y SV+EAIDKME DLPGFFYAGNHRGGLS
Sbjct: 410 SDLQRLLGVEGEPVSVNHYYWRKAFPLYDSSYDSVMEAIDKMENDLPGFFYAGNHRGGLS 469
Query: 360 VGKAIASGCKAADLVISYLNNASESIVPD 274
VGK+IASGCKAADLVISYL + S P+
Sbjct: 470 VGKSIASGCKAADLVISYLESCSNDKKPN 498
>dbj|BAB08301.1| protoporphyrinogen IX oxidase [Arabidopsis thaliana]
Length = 547
Score = 140 bits (353), Expect = 1e-32
Identities = 66/89 (74%), Positives = 74/89 (82%)
Frame = -3
Query: 540 SDLRKLLGAEGEPSFVNHFYWSKGFPLYARNYGSVLEAIDKMEKDLPGFFYAGNHRGGLS 361
SDL++LLG EGEP VNH+YW K FPLY +Y SV+EAIDKME DLPGFFYAGNHRGGLS
Sbjct: 456 SDLQRLLGVEGEPVSVNHYYWRKAFPLYDSSYDSVMEAIDKMENDLPGFFYAGNHRGGLS 515
Query: 360 VGKAIASGCKAADLVISYLNNASESIVPD 274
VGK+IASGCKAADLVISYL + S P+
Sbjct: 516 VGKSIASGCKAADLVISYLESCSNDKKPN 544
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,806,525
Number of Sequences: 1393205
Number of extensions: 8884352
Number of successful extensions: 23866
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23863
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
