Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000037A_C01 KMC000037A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidops... 142 5e-33
ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g... 142 5e-33
dbj|BAA88176.1| unnamed protein product [Oryza sativa (japonica ... 132 6e-30
ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21... 132 6e-30
emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana] 128 6e-29
>pir||A84668 Argonaute (AGO1)-like protein [imported] - Arabidopsis thaliana
Length = 930
Score = 142 bits (357), Expect = 5e-33
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = -2
Query: 671 GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGL 492
GFS DELQELVHSLSYVYQRST+AISVVAPICYAHLAA QLG FMKFED+SETSSSHGG+
Sbjct: 846 GFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQSETSSSHGGI 905
Query: 491 SAAGAVPVPQLPKLQDNVCNSMFF 420
+A G + V QLP+L+DNV NSMFF
Sbjct: 906 TAPGPISVAQLPRLKDNVANSMFF 929
>ref|NP_565633.1| Argonaute (AGO1)-like protein; protein id: At2g27040.1, supported by
cDNA: gi_14334815, supported by cDNA: gi_15293198
[Arabidopsis thaliana] gi|14334816|gb|AAK59586.1|
putative Argonaute (AGO1) protein [Arabidopsis thaliana]
gi|15293199|gb|AAK93710.1| putative argonaute AGO1
protein [Arabidopsis thaliana] gi|20197419|gb|AAC77862.2|
Argonaute (AGO1)-like protein [Arabidopsis thaliana]
Length = 924
Score = 142 bits (357), Expect = 5e-33
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = -2
Query: 671 GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGL 492
GFS DELQELVHSLSYVYQRST+AISVVAPICYAHLAA QLG FMKFED+SETSSSHGG+
Sbjct: 840 GFSADELQELVHSLSYVYQRSTSAISVVAPICYAHLAAAQLGTFMKFEDQSETSSSHGGI 899
Query: 491 SAAGAVPVPQLPKLQDNVCNSMFF 420
+A G + V QLP+L+DNV NSMFF
Sbjct: 900 TAPGPISVAQLPRLKDNVANSMFF 923
>dbj|BAA88176.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 904
Score = 132 bits (331), Expect = 6e-30
Identities = 63/84 (75%), Positives = 75/84 (89%)
Frame = -2
Query: 671 GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGL 492
GFS D+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA Q+ QF+KF++ SETSSSHGG
Sbjct: 820 GFSADDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVSQFIKFDEMSETSSSHGGH 879
Query: 491 SAAGAVPVPQLPKLQDNVCNSMFF 420
++AG+ PVP+LP+L + V +SMFF
Sbjct: 880 TSAGSAPVPELPRLHNKVRSSMFF 903
>ref|NP_197613.1| zwille/pinhead-like protein; protein id: At5g21150.1 [Arabidopsis
thaliana] gi|29294055|gb|AAO73892.1| PAZ (Piwi Argonaut
and Zwille) family [Arabidopsis thaliana]
Length = 892
Score = 132 bits (331), Expect = 6e-30
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = -2
Query: 671 GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGL 492
GF+ D+LQELVHSLSYVYQRSTTAISVVAP+CYAHLAA Q+G MK+E+ SETSSSHGG+
Sbjct: 808 GFATDDLQELVHSLSYVYQRSTTAISVVAPVCYAHLAAAQMGTVMKYEELSETSSSHGGI 867
Query: 491 SAAGAVPVPQLPKLQDNVCNSMFF 420
+ GAVPVP +P+L +NV SMFF
Sbjct: 868 TTPGAVPVPPMPQLHNNVSTSMFF 891
>emb|CAD66636.1| ARGONAUTE9 protein [Arabidopsis thaliana]
Length = 896
Score = 128 bits (322), Expect = 6e-29
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = -2
Query: 671 GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGL 492
GF+ D+LQELVHSLS+VYQRSTTAISVVAP+CYAHLAA Q+G MK+E+ SETSSSHGG+
Sbjct: 812 GFATDDLQELVHSLSHVYQRSTTAISVVAPVCYAHLAAAQMGTVMKYEELSETSSSHGGI 871
Query: 491 SAAGAVPVPQLPKLQDNVCNSMFF 420
+ G VPVP +P+L +NV SMFF
Sbjct: 872 TTPGTVPVPPMPQLHNNVSTSMFF 895
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,794,902
Number of Sequences: 1393205
Number of extensions: 11327561
Number of successful extensions: 27113
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 26191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27094
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
