Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000036A_C01 KMC000036A_c01
(597 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK95061.1| olfactory receptor [Homo sapiens] 32 4.7
ref|XP_210169.1| similar to olfactory receptor MOR232-9 [Mus mus... 32 4.7
>gb|AAK95061.1| olfactory receptor [Homo sapiens]
Length = 213
Score = 32.3 bits (72), Expect = 4.7
Identities = 20/67 (29%), Positives = 32/67 (46%)
Frame = -2
Query: 422 TVMMCGIYIRL*CNVLSHNAVS*MRGCGYVLLILMWV*AINLVGAMWV*FSVWPCFVGDT 243
TVM C Y+ + C L++ + C +L+ + WV L + + F+VW F G
Sbjct: 49 TVMACDCYVAI-CKPLNYTTIMSHSLC-ILLVAVAWVGGF-LHATIQILFTVWLPFCGPN 105
Query: 242 EFGHLLC 222
GH +C
Sbjct: 106 VIGHFMC 112
>ref|XP_210169.1| similar to olfactory receptor MOR232-9 [Mus musculus] [Homo
sapiens]
Length = 346
Score = 32.3 bits (72), Expect = 4.7
Identities = 20/67 (29%), Positives = 32/67 (46%)
Frame = -2
Query: 422 TVMMCGIYIRL*CNVLSHNAVS*MRGCGYVLLILMWV*AINLVGAMWV*FSVWPCFVGDT 243
TVM C Y+ + C L++ + C +L+ + WV L + + F+VW F G
Sbjct: 114 TVMACDCYVAI-CKPLNYTTIMSHSLC-ILLVAVAWVGGF-LHATIQILFTVWLPFCGPN 170
Query: 242 EFGHLLC 222
GH +C
Sbjct: 171 VIGHFMC 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 513,085,363
Number of Sequences: 1393205
Number of extensions: 11261308
Number of successful extensions: 20924
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20895
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
