Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000035A_C01 KMC000035A_c01
(630 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64961.1| putative C-4 sterol methyl oxidase [Arabidopsis t... 87 2e-16
ref|NP_192948.1| putative C-4 sterol methyl oxidase; protein id:... 87 2e-16
ref|NP_567670.1| Expressed protein; protein id: At4g22756.1, sup... 83 3e-15
gb|AAM65428.1| putative C-4 sterol methyl oxidase [Arabidopsis t... 83 3e-15
gb|AAK61361.1| putative sterol 4-alpha-methyl-oxidase [Arabidops... 83 3e-15
>gb|AAM64961.1| putative C-4 sterol methyl oxidase [Arabidopsis thaliana]
Length = 298
Score = 86.7 bits (213), Expect = 2e-16
Identities = 38/51 (74%), Positives = 42/51 (81%)
Frame = -2
Query: 629 HYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKILRKLKEDLTNGADQNGG 477
HYVGGQSQSNFASVFTYCDYIYGTDKGYR+QKK+L ++KE NGG
Sbjct: 244 HYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQIKESSKKSNKHNGG 294
>ref|NP_192948.1| putative C-4 sterol methyl oxidase; protein id: At4g12110.1,
supported by cDNA: 35110. [Arabidopsis thaliana]
gi|21928127|gb|AAM78091.1| AT4g12110/F16J13_180
[Arabidopsis thaliana] gi|23308291|gb|AAN18115.1|
At4g12110/F16J13_180 [Arabidopsis thaliana]
Length = 298
Score = 86.7 bits (213), Expect = 2e-16
Identities = 38/51 (74%), Positives = 42/51 (81%)
Frame = -2
Query: 629 HYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKILRKLKEDLTNGADQNGG 477
HYVGGQSQSNFASVFTYCDYIYGTDKGYR+QKK+L ++KE NGG
Sbjct: 244 HYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLEQIKESSKKSNKHNGG 294
>ref|NP_567670.1| Expressed protein; protein id: At4g22756.1, supported by cDNA:
39135. [Arabidopsis thaliana]
Length = 299
Score = 82.8 bits (203), Expect = 3e-15
Identities = 38/54 (70%), Positives = 45/54 (82%), Gaps = 6/54 (11%)
Frame = -2
Query: 629 HYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKILRKLKE------DLTNGADQ 486
HYVGGQSQSNFASVFTYCDYIYGTDKGYR+QKK+L+++KE L NG ++
Sbjct: 244 HYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLQQMKEKSKKSNKLVNGGEK 297
>gb|AAM65428.1| putative C-4 sterol methyl oxidase [Arabidopsis thaliana]
Length = 299
Score = 82.8 bits (203), Expect = 3e-15
Identities = 38/54 (70%), Positives = 45/54 (82%), Gaps = 6/54 (11%)
Frame = -2
Query: 629 HYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKILRKLKE------DLTNGADQ 486
HYVGGQSQSNFASVFTYCDYIYGTDKGYR+QKK+L+++KE L NG ++
Sbjct: 244 HYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLQQMKEKSKKSNKLVNGGEK 297
>gb|AAK61361.1| putative sterol 4-alpha-methyl-oxidase [Arabidopsis thaliana]
Length = 299
Score = 82.8 bits (203), Expect = 3e-15
Identities = 38/54 (70%), Positives = 45/54 (82%), Gaps = 6/54 (11%)
Frame = -2
Query: 629 HYVGGQSQSNFASVFTYCDYIYGTDKGYRYQKKILRKLKE------DLTNGADQ 486
HYVGGQSQSNFASVFTYCDYIYGTDKGYR+QKK+L+++KE L NG ++
Sbjct: 244 HYVGGQSQSNFASVFTYCDYIYGTDKGYRFQKKLLQQMKEKSKKSNKLVNGGEK 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,396,465
Number of Sequences: 1393205
Number of extensions: 11673030
Number of successful extensions: 24048
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 23500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24043
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
