Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000034A_C01 KMC000034A_c01
(737 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02343.1| gb|AAD14441.1~gene_id:MIL23.5~similar to unknown... 199 3e-50
ref|NP_188785.1| unknown protein; protein id: At3g21480.1 [Arabi... 181 1e-44
ref|NP_192222.1| hypothetical protein; protein id: At4g03130.1 [... 110 2e-23
dbj|BAB89727.1| P0504E02.29 [Oryza sativa (japonica cultivar-gro... 103 3e-21
gb|AAH08328.1|AAH08328 Unknown (protein for IMAGE:3503689) [Homo... 85 1e-15
>dbj|BAB02343.1| gb|AAD14441.1~gene_id:MIL23.5~similar to unknown protein [Arabidopsis
thaliana]
Length = 1041
Score = 199 bits (506), Expect = 3e-50
Identities = 94/140 (67%), Positives = 121/140 (86%)
Frame = -2
Query: 736 LDERNYILRDAKKEKEFGFSLPVSLARASEHPLLKGRRVLITPNTKPSKDIISSLVMAVQ 557
+DE YILRD+KKEKEF F++ VSLARA + PLL+GRRV ITPNTKP+ + I++LV AV
Sbjct: 891 VDEDMYILRDSKKEKEFCFNMGVSLARARQFPLLQGRRVFITPNTKPALNTITTLVKAVH 950
Query: 556 GQAVERVGRSAMKDKKIPDDLLILSCEEDYATCVPFLEKGAVIYSSELLLNGIVTQKLEY 377
G VER+GRS++ + K+P++LL+LSCEED A C+PFLE+GA +YSSELLLNGIVTQ+LEY
Sbjct: 951 GLPVERLGRSSLSEDKVPENLLVLSCEEDRAICIPFLERGAEVYSSELLLNGIVTQRLEY 1010
Query: 376 QRYRLFADHVKKTRSTIWLR 317
+RYRLF DHV++TRSTIW++
Sbjct: 1011 ERYRLFTDHVRRTRSTIWIK 1030
>ref|NP_188785.1| unknown protein; protein id: At3g21480.1 [Arabidopsis thaliana]
Length = 1045
Score = 181 bits (459), Expect = 1e-44
Identities = 89/144 (61%), Positives = 116/144 (79%), Gaps = 4/144 (2%)
Frame = -2
Query: 736 LDERNYILRDAKKEKEFGFSLPVSLARASEHPLLKGRRVLITPNTKPSKDIISSLVMAVQ 557
+DE YILRD+KKEKEF F++ VSLARA + PLL+GRRV ITPNTKP+ + I++LV AV
Sbjct: 891 VDEDMYILRDSKKEKEFCFNMGVSLARARQFPLLQGRRVFITPNTKPALNTITTLVKAVH 950
Query: 556 GQAVER----VGRSAMKDKKIPDDLLILSCEEDYATCVPFLEKGAVIYSSELLLNGIVTQ 389
G + S++ + K+P++LL+LSCEED A C+PFLE+GA +YSSELLLNGIVTQ
Sbjct: 951 GLVIISSPFYTFISSLSEDKVPENLLVLSCEEDRAICIPFLERGAEVYSSELLLNGIVTQ 1010
Query: 388 KLEYQRYRLFADHVKKTRSTIWLR 317
+LEY+RYRLF DHV++TRSTIW++
Sbjct: 1011 RLEYERYRLFTDHVRRTRSTIWIK 1034
>ref|NP_192222.1| hypothetical protein; protein id: At4g03130.1 [Arabidopsis
thaliana] gi|25407164|pir||G85039 hypothetical protein
AT4g03130 [imported] - Arabidopsis thaliana
gi|4262141|gb|AAD14441.1| hypothetical protein
[Arabidopsis thaliana] gi|7270183|emb|CAB77798.1|
hypothetical protein [Arabidopsis thaliana]
Length = 765
Score = 110 bits (276), Expect = 2e-23
Identities = 56/102 (54%), Positives = 74/102 (71%)
Frame = -2
Query: 736 LDERNYILRDAKKEKEFGFSLPVSLARASEHPLLKGRRVLITPNTKPSKDIISSLVMAVQ 557
+DE++YILRD KKEK+ GF L SLARA +HPLLKG +V ITP+ KPS+ +I+ LV Q
Sbjct: 635 IDEKSYILRDIKKEKD-GFCLLTSLARAKQHPLLKGFKVCITPSIKPSRGMITDLVKMTQ 693
Query: 556 GQAVERVGRSAMKDKKIPDDLLILSCEEDYATCVPFLEKGAV 431
GQ VE A +D+ P+D+LILSC+ED C+PF+ +G V
Sbjct: 694 GQVVEASEIIAAEDRNFPEDVLILSCKEDRDFCLPFVNQGTV 735
>dbj|BAB89727.1| P0504E02.29 [Oryza sativa (japonica cultivar-group)]
gi|20161326|dbj|BAB90250.1| B1150F11.10 [Oryza sativa
(japonica cultivar-group)]
Length = 819
Score = 103 bits (257), Expect = 3e-21
Identities = 52/125 (41%), Positives = 86/125 (68%), Gaps = 4/125 (3%)
Frame = -2
Query: 733 DERNYILRDAKKEKEFGFSLPVSLARASEHPLL----KGRRVLITPNTKPSKDIISSLVM 566
+E + +L+ +++ ++ ++ V L+++ + L KGRRVLITPN KPSK+++ SLV+
Sbjct: 673 NEVSPVLQSSRRRRKHMSTVRVLLSQSMGNETLNDQTKGRRVLITPNAKPSKELLKSLVV 732
Query: 565 AVQGQAVERVGRSAMKDKKIPDDLLILSCEEDYATCVPFLEKGAVIYSSELLLNGIVTQK 386
G+ +ER S MK++ + ++SCE+DY CVPF++ G ++ SEL+LNGIVTQK
Sbjct: 733 TAHGKVLERNAMSKMKNRSLMG-AFVISCEQDYKICVPFIKNGFEVFESELVLNGIVTQK 791
Query: 385 LEYQR 371
LE++R
Sbjct: 792 LEFER 796
>gb|AAH08328.1|AAH08328 Unknown (protein for IMAGE:3503689) [Homo sapiens]
Length = 391
Score = 84.7 bits (208), Expect = 1e-15
Identities = 45/128 (35%), Positives = 74/128 (57%), Gaps = 4/128 (3%)
Frame = -2
Query: 736 LDERNYILRDAKKEKEFGFSLPVSLARASEHPLLKGRRVLITPNTKPSKDIISSLVMAVQ 557
+DE+NYILRDA+ E F FSL SL RA PL K + ITP PS + ++V
Sbjct: 262 IDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYITPGICPSLSTMKAIVECAG 321
Query: 556 GQAVERVG--RSAMKDKKIP--DDLLILSCEEDYATCVPFLEKGAVIYSSELLLNGIVTQ 389
G+ + + R M+ K+ +++++SCE D C + +G ++++E +L G++TQ
Sbjct: 322 GKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQ 381
Query: 388 KLEYQRYR 365
L+Y+ Y+
Sbjct: 382 TLDYESYK 389
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,474,695
Number of Sequences: 1393205
Number of extensions: 14371352
Number of successful extensions: 33874
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 32765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33859
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
