Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000033A_C01 KMC000033A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174491.1| hypothetical protein; protein id: At1g32120.1 [... 55 9e-07
gb|AAM94299.1| hypothetical protein [Sorghum bicolor] 39 0.064
gb|AAD27628.1|AF128457_2 hypothetical protein [Oryza sativa subs... 39 0.064
gb|AAD27684.1|AF119222_16 hypothetical protein [Oryza sativa] 39 0.064
gb|AAD20312.1| hypothetical protein [Zea mays] 39 0.064
>ref|NP_174491.1| hypothetical protein; protein id: At1g32120.1 [Arabidopsis thaliana]
gi|25518597|pir||E86445 hypothetical protein F3C3.9
[imported] - Arabidopsis thaliana
gi|10801373|gb|AAG23445.1|AC084165_11 hypothetical
protein [Arabidopsis thaliana]
Length = 1206
Score = 54.7 bits (130), Expect = 9e-07
Identities = 24/42 (57%), Positives = 30/42 (71%)
Frame = -2
Query: 499 PHLPDGC*IRNNSITCHSADSEIRGELLASFQLFVAVLVVLV 374
P +P GC ++ NS+ C S DSE+ GE LA+FQLF VL VLV
Sbjct: 1148 PMMPQGCSLKQNSVVCRSVDSEVSGEFLANFQLFSLVLAVLV 1189
>gb|AAM94299.1| hypothetical protein [Sorghum bicolor]
Length = 298
Score = 38.5 bits (88), Expect = 0.064
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = -2
Query: 589 LCLIAAAAFCAEYHLFYFHSTTP*GP*GLLPHL 491
LCL+AA AF AE LFYFHSTT G G +L
Sbjct: 129 LCLVAATAFTAELVLFYFHSTTHMGLEGYYHYL 161
>gb|AAD27628.1|AF128457_2 hypothetical protein [Oryza sativa subsp. indica]
Length = 309
Score = 38.5 bits (88), Expect = 0.064
Identities = 38/122 (31%), Positives = 46/122 (37%), Gaps = 52/122 (42%)
Frame = -2
Query: 589 LCLIAAAAFCAEYHLFYFHSTTP*GP*G---------------------LLP-------- 497
LCL+A+ AF AE LFYFHSTT G G LLP
Sbjct: 130 LCLVASTAFMAELLLFYFHSTTHQGLEGYYHYLLVVVVALCVATTVLGALLPASFPVDIA 189
Query: 496 ----------------------HLPDGC-*IRNNSITCHSADSEIRGELLASFQLFVAVL 386
LP GC + I CH+ ++ R E LA+FQLF V
Sbjct: 190 SGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQLANFQLFGLVF 249
Query: 385 VV 380
+V
Sbjct: 250 LV 251
>gb|AAD27684.1|AF119222_16 hypothetical protein [Oryza sativa]
Length = 309
Score = 38.5 bits (88), Expect = 0.064
Identities = 38/122 (31%), Positives = 46/122 (37%), Gaps = 52/122 (42%)
Frame = -2
Query: 589 LCLIAAAAFCAEYHLFYFHSTTP*GP*G---------------------LLP-------- 497
LCL+A+ AF AE LFYFHSTT G G LLP
Sbjct: 130 LCLVASTAFMAELLLFYFHSTTHQGLEGYYHYLLVVVVALCVATTVLGALLPASFPVDIA 189
Query: 496 ----------------------HLPDGC-*IRNNSITCHSADSEIRGELLASFQLFVAVL 386
LP GC + I CH+ ++ R E LA+FQLF V
Sbjct: 190 SGAAIALQGLWFYQTAFTLYGPSLPAGCRRDADGHIDCHTHAAQERAEQLANFQLFGLVF 249
Query: 385 VV 380
+V
Sbjct: 250 LV 251
>gb|AAD20312.1| hypothetical protein [Zea mays]
Length = 296
Score = 38.5 bits (88), Expect = 0.064
Identities = 20/33 (60%), Positives = 22/33 (66%)
Frame = -2
Query: 589 LCLIAAAAFCAEYHLFYFHSTTP*GP*GLLPHL 491
LCL+AA AF AE LFYFHSTT G G +L
Sbjct: 125 LCLVAATAFTAELVLFYFHSTTHMGLEGYYHYL 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,978,104
Number of Sequences: 1393205
Number of extensions: 10388274
Number of successful extensions: 24728
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24694
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
