Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000032A_C01 KMC000032A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90655.1| B1033B05.5 [Oryza sativa (japonica cultivar-grou... 57 1e-07
ref|NP_173840.1| unknown protein; protein id: At1g24300.1 [Arabi... 54 2e-06
ref|NP_174063.1| unknown protein; protein id: At1g27430.1 [Arabi... 53 3e-06
pir||F86399 protein F17L21.22 [imported] - Arabidopsis thaliana ... 53 3e-06
emb|CAC19011.1| meis2.1 protein [Danio rerio] 39 0.041
>dbj|BAB90655.1| B1033B05.5 [Oryza sativa (japonica cultivar-group)]
gi|20161927|dbj|BAB90838.1| P0592G05.24 [Oryza sativa
(japonica cultivar-group)]
Length = 1530
Score = 57.0 bits (136), Expect = 1e-07
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = -1
Query: 521 SSSFSEGAGSET---SFIDMLKQPVLPEVDTHSTSGAGTEPSDGGQAGRSGKKKGKKGKQ 351
+ SF +G+ SF +M+K P + + S E +DGG G+ KKK KKGKQ
Sbjct: 1450 AGSFISPSGTSVDGPSFREMVKSTKKPALQQYDAS----ESADGGPGGKGAKKKTKKGKQ 1505
Query: 350 IDPSLLGFKVSSH 312
IDPSLLGFKV S+
Sbjct: 1506 IDPSLLGFKVHSN 1518
>ref|NP_173840.1| unknown protein; protein id: At1g24300.1 [Arabidopsis thaliana]
gi|7486371|pir||T00661 hypothetical protein F3I6.24 -
Arabidopsis thaliana gi|2829883|gb|AAC00591.1| Unknown
protein [Arabidopsis thaliana]
Length = 1417
Score = 53.5 bits (127), Expect = 2e-06
Identities = 33/69 (47%), Positives = 45/69 (64%), Gaps = 3/69 (4%)
Frame = -1
Query: 509 SEGAGSE-TSFIDMLKQPVLPEVDTHSTSGAGTEPSD--GGQAGRSGKKKGKKGKQIDPS 339
++G+ SE TSF +MLK+ ++S E +D G G GKKKGKKG+QIDP+
Sbjct: 1344 NKGSTSEATSFSEMLKK-------SNSMKKVAAESNDVTEGSKGGGGKKKGKKGRQIDPA 1396
Query: 338 LLGFKVSSH 312
LLGFKV+S+
Sbjct: 1397 LLGFKVTSN 1405
>ref|NP_174063.1| unknown protein; protein id: At1g27430.1 [Arabidopsis thaliana]
Length = 1453
Score = 52.8 bits (125), Expect = 3e-06
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Frame = -1
Query: 509 SEGAGSET-SFIDMLKQP-VLPEVDTHSTSGAGTEPSDGGQAGRSGKKKGKKGKQIDPSL 336
++G+ SE SF +MLK+ + +V ST TE S GG GKKKGKKG+QIDP+L
Sbjct: 1379 NKGSTSEAASFSEMLKKSNSMKKVAAESTDA--TEGSKGG----GGKKKGKKGRQIDPAL 1432
Query: 335 LGFKVSSH 312
LGFKV+S+
Sbjct: 1433 LGFKVTSN 1440
>pir||F86399 protein F17L21.22 [imported] - Arabidopsis thaliana
gi|9802542|gb|AAF99744.1|AC004557_23 F17L21.22
[Arabidopsis thaliana]
Length = 1475
Score = 52.8 bits (125), Expect = 3e-06
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Frame = -1
Query: 509 SEGAGSET-SFIDMLKQP-VLPEVDTHSTSGAGTEPSDGGQAGRSGKKKGKKGKQIDPSL 336
++G+ SE SF +MLK+ + +V ST TE S GG GKKKGKKG+QIDP+L
Sbjct: 1401 NKGSTSEAASFSEMLKKSNSMKKVAAESTDA--TEGSKGG----GGKKKGKKGRQIDPAL 1454
Query: 335 LGFKVSSH 312
LGFKV+S+
Sbjct: 1455 LGFKVTSN 1462
>emb|CAC19011.1| meis2.1 protein [Danio rerio]
Length = 393
Score = 38.9 bits (89), Expect = 0.041
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 518 SSFSEGAGSETSFIDMLKQPVLPEVDTHSTSGAGTE-PSDGGQAGRSGKKKGKKGKQIDP 342
S F + +GS T+ D D HST GT PS GG A +SG + G +D
Sbjct: 199 SDFDDLSGSSTNLADHNPASWRDMDDAHSTPSVGTPGPSSGGHASQSGDNSSELGDGLDN 258
Query: 341 SLLGFKVSSHSDHD 300
SL D D
Sbjct: 259 SLASPGTGDEDDQD 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,589,363
Number of Sequences: 1393205
Number of extensions: 10361618
Number of successful extensions: 30647
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 29195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30599
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
