Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000030A_C01 KMC000030A_c01
(458 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S54157 extensin-like protein - cowpea (fragment) 42 0.003
ref|NP_176464.1| hypothetical protein; protein id: At1g62763.1 [... 36 0.22
ref|NP_178539.2| putative cation transport protein; protein id: ... 35 0.28
emb|CAD40879.1| OSJNBa0064H22.24 [Oryza sativa (japonica cultiva... 34 0.63
pir||C71610 probable membrane associated protein PFB0615c - mala... 34 0.63
>pir||S54157 extensin-like protein - cowpea (fragment)
Length = 279
Score = 42.0 bits (97), Expect = 0.003
Identities = 27/78 (34%), Positives = 34/78 (42%)
Frame = +1
Query: 205 SSQHCYSYHLQCSSYPSHSLLHFLQHHHHFYVLQHQQQFPLSF*HTHQFHLQCS*IQHTR 384
S H + H + SH LLH L HH H + +H P+S H HL + H
Sbjct: 93 SPHHHHLLHRHLLMFTSHHLLHLLPHHLHMCISRHHHHLPMST-SPHHHHL----LHH-- 145
Query: 385 E*CSHLGLIESFYLLHLL 438
HL + S LLHLL
Sbjct: 146 ----HLPMSTSHPLLHLL 159
Score = 38.9 bits (89), Expect = 0.026
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +1
Query: 199 NPSSQHCYSYHLQCSSYPSHSLLHFLQHHHHFYVLQHQQ-----QFPLSF*HTHQFHLQC 363
+P H +HL S+ SH LLH L HH H + H + P +F H HL
Sbjct: 136 SPHHHHLLHHHLPMST--SHPLLHLLLHHLHMCISHHHHHLLHLRLP-TFTSPHLLHL-- 190
Query: 364 S*IQHTRE*CSHLGLIESFYLLHLL 438
+ H HL + S +LLHLL
Sbjct: 191 --LPH------HLPMFTSLHLLHLL 207
Score = 37.4 bits (85), Expect = 0.074
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Frame = +1
Query: 214 HCYSYHLQCSSYPSHSLLHFLQHH-------HHFYVLQHQQQFPLSF*HTHQFHLQCS*I 372
H +HL + SH LLH L HH HH ++L H L F H HL +
Sbjct: 18 HLLHHHLLM--FTSHHLLHLLPHHLHMCISRHHHHLLHHHL---LMFTSHHLLHL----L 68
Query: 373 QHTRE*CSHLGLIESFYLLHLL 438
H HL + S +LLHLL
Sbjct: 69 PH------HLPMFTSLHLLHLL 84
Score = 36.2 bits (82), Expect = 0.17
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Frame = +1
Query: 205 SSQHCYSYHLQCSSYPSHSLLHFLQHH-------HHFYVLQHQQQFPLSF*HTHQFHLQC 363
S H + H + SH LLH L HH H ++L H +S H H H
Sbjct: 45 SRHHHHLLHHHLLMFTSHHLLHLLPHHLPMFTSLHLLHLLPHHLPMCISPHHHHLLH--- 101
Query: 364 S*IQHTRE*CSHLGLIESFYLLHLL 438
HL + S +LLHLL
Sbjct: 102 ----------RHLLMFTSHHLLHLL 116
Score = 35.0 bits (79), Expect = 0.37
Identities = 20/59 (33%), Positives = 25/59 (41%), Gaps = 7/59 (11%)
Frame = +1
Query: 199 NPSSQHCYSYHLQCSSYPSHSLLHFLQHH-------HHFYVLQHQQQFPLSF*HTHQFH 354
+P H +HL + SH LLH L HH HH ++L H S H H H
Sbjct: 216 SPHHHHLLHHHLLM--FTSHHLLHLLPHHLHMCISRHHHHLLHHHLLMSTSPHHHHLLH 272
>ref|NP_176464.1| hypothetical protein; protein id: At1g62763.1 [Arabidopsis
thaliana] gi|6630459|gb|AAF19547.1|AC007190_15 F23N19.12
[Arabidopsis thaliana]
Length = 312
Score = 35.8 bits (81), Expect = 0.22
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +3
Query: 216 LLLLPPAVLIISLTLSSPLSATSPPLLCSPTPTTVSPVLLTHSSISPSM--*LNSTYT*V 389
+L L A+L+ T SS LS +S SP+P + SP SS+SPS L+ + +
Sbjct: 9 ILHLSIAILLFITTSSSSLSPSSSSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 68
Query: 390 VQPPRSNRILLSSPPLISP 446
PP S+ L S P +SP
Sbjct: 69 PPPPPSSSPLSSLSPSLSP 87
>ref|NP_178539.2| putative cation transport protein; protein id: At2g04620.1
[Arabidopsis thaliana]
Length = 798
Score = 35.4 bits (80), Expect = 0.28
Identities = 21/71 (29%), Positives = 30/71 (41%)
Frame = +1
Query: 187 KDHGNPSSQHCYSYHLQCSSYPSHSLLHFLQHHHHFYVLQHQQQFPLSF*HTHQFHLQCS 366
++H S H + H Q S H H HHHH + +H ++ + H HQ H
Sbjct: 568 EEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKH-EECNHNHDHEHQSH---- 622
Query: 367 *IQHTRE*CSH 399
H E C+H
Sbjct: 623 --SHNHEECNH 631
>emb|CAD40879.1| OSJNBa0064H22.24 [Oryza sativa (japonica cultivar-group)]
Length = 152
Score = 34.3 bits (77), Expect = 0.63
Identities = 15/37 (40%), Positives = 22/37 (58%)
Frame = +3
Query: 225 LPPAVLIISLTLSSPLSATSPPLLCSPTPTTVSPVLL 335
LPPAV L L P ++ + P C+P P T +P++L
Sbjct: 105 LPPAVAAAPLVLPLPRASAAEPPRCAPMPPTAAPLVL 141
>pir||C71610 probable membrane associated protein PFB0615c - malaria parasite
(Plasmodium falciparum)
Length = 2013
Score = 34.3 bits (77), Expect = 0.63
Identities = 20/52 (38%), Positives = 26/52 (49%)
Frame = +1
Query: 136 NFKVYNHASAWPTF*PCKDHGNPSSQHCYSYHLQCSSYPSHSLLHFLQHHHH 291
NF YN+ S++ F H N SS H S H SS+ + S H L HH+
Sbjct: 1690 NFSSYNNLSSYNNF---SSHHNLSSHHNLSSHHNLSSHHNLSSHHNLSSHHN 1738
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,493,515
Number of Sequences: 1393205
Number of extensions: 9426710
Number of successful extensions: 37427
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 32563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36216
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11706011480
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
