Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000028A_C01 KMC000028A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P98088|MUC5_HUMAN Tracheobronchial mucin (TBM) (Major airway ... 32 5.1
gb|AAH33831.1| Unknown (protein for IMAGE:3852667) [Homo sapiens] 32 5.1
pir||A57534 mucin 5AC (clone L31) - human (fragment) gi|1052608|... 32 5.1
emb|CAA04738.1| MUC5AC protein [Homo sapiens] gi|3334749|emb|CAA... 32 5.1
ref|NP_726292.1| Gustatory receptor 59c CG30186-PA gi|22095712|s... 31 6.7
>sp|P98088|MUC5_HUMAN Tracheobronchial mucin (TBM) (Major airway glycoprotein)
gi|631466|pir||A53767 mucin MUC5B, tracheobronchial -
human gi|488073|gb|AAA18431.1| tracheobronchial mucin
Length = 1056
Score = 31.6 bits (70), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 317 GCHTNRFILQGNTIFHQCLCCQVLIT 394
G ++ + L+GNT+ H+C CCQ L T
Sbjct: 947 GDSSSMYSLEGNTVEHRCQCCQELRT 972
>gb|AAH33831.1| Unknown (protein for IMAGE:3852667) [Homo sapiens]
Length = 574
Score = 31.6 bits (70), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 317 GCHTNRFILQGNTIFHQCLCCQVLIT 394
G ++ + L+GNT+ H+C CCQ L T
Sbjct: 482 GDSSSMYSLEGNTVEHRCQCCQELRT 507
>pir||A57534 mucin 5AC (clone L31) - human (fragment) gi|1052608|emb|CAA88307.1|
apomucin [Homo sapiens]
Length = 1042
Score = 31.6 bits (70), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 317 GCHTNRFILQGNTIFHQCLCCQVLIT 394
G ++ + L+GNT+ H+C CCQ L T
Sbjct: 858 GDSSSMYSLEGNTVEHRCQCCQELRT 883
>emb|CAA04738.1| MUC5AC protein [Homo sapiens] gi|3334749|emb|CAA04737.1| MUC5AC
protein [Homo sapiens]
Length = 1081
Score = 31.6 bits (70), Expect = 5.1
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 317 GCHTNRFILQGNTIFHQCLCCQVLIT 394
G ++ + L+GNT+ H+C CCQ L T
Sbjct: 989 GDSSSMYSLEGNTVEHRCQCCQELRT 1014
>ref|NP_726292.1| Gustatory receptor 59c CG30186-PA gi|22095712|sp|Q9W1U5|G59C_DROME
Putative gustatory receptor 59c
gi|23240127|gb|AAF46958.3| CG30186-PA [Drosophila
melanogaster]
Length = 397
Score = 31.2 bits (69), Expect = 6.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 269 SVAYIISFLGKVYRNTCCIIFNDGMIGNS*WGLV 168
S+ Y S +G +Y + C I+++ G++ WGL+
Sbjct: 261 SLVYFFSTMGSIYFSVCSILYSSTGFGSTYWGLL 294
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,698,016
Number of Sequences: 1393205
Number of extensions: 7228877
Number of successful extensions: 13316
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13309
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
