Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000027A_C03 KMC000027A_c03
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703540.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.3
ref|NP_473177.2| hypothetical protein [Plasmodium falciparum 3D7... 32 7.3
ref|NP_062014.1| transducin-like enhancer of split 4, homolog of... 32 9.5
>ref|NP_703540.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504682|emb|CAD51560.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2488
Score = 33.1 bits (74), Expect = 3.3
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = -1
Query: 456 SSTPTDKQISYLKKLGCTATPTSRLHASHLIEQYKSL*QLVLGYSLFLPSLFNVKNIVKA 277
+STP+ + K C SR H ++Y L L LG++L L S + + ++
Sbjct: 2347 NSTPSSAVYQLIYKKTC-----SRTHEDFNSDKYSLLTDLKLGHNLNLKSAYAISKLLSQ 2401
Query: 276 KLVPY*INTCELH 238
KL P N EL+
Sbjct: 2402 KLNPEEYNNLELY 2414
>ref|NP_473177.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|15375373|emb|CAB39000.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1446
Score = 32.0 bits (71), Expect = 7.3
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = +2
Query: 188 RSFANCHR*YYDYQNALCNSHVLI*YGTSLAFTMFLTLNKLGRKREYPNTN 340
++ N H YY +N + N+HVL Y T L F FL K +K+ Y + N
Sbjct: 977 KNIRNIHNSYYHIKNIIKNNHVLYVYSTYLQF--FLLWRK-KKKKNYEDDN 1024
>ref|NP_062014.1| transducin-like enhancer of split 4, homolog of Drosophila E(spl)
[Rattus norvegicus] gi|1174716|sp|Q07141|TLE4_RAT
Transducin-like enhancer protein 4 (ESP2 protein)
gi|1083650|pir||B49555 enhancer of split homolog R-esp2
- rat gi|294549|gb|AAC37640.1| 'transducin [Rattus
norvegicus]
Length = 741
Score = 31.6 bits (70), Expect = 9.5
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Frame = -1
Query: 600 KSCIRCDEAFQYAPSILRWERIPADKRAHLMREKQEHFLKLRIEKAMGSSTPTDKQISYL 421
+SC R E FQ+ + ++ +K A E Q H++ + E + G + KQ +
Sbjct: 23 ESCDRIKEEFQFLQAQYHSLKLECEKLASEKTEMQRHYV-MYYEMSYGLNIEMHKQAEIV 81
Query: 420 KKLG--------CTATPTSRLHASHLI 364
K+L C + +L A HL+
Sbjct: 82 KRLNAICAQVIPCLSQEQQQLQAQHLL 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,317,035
Number of Sequences: 1393205
Number of extensions: 11303187
Number of successful extensions: 19846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19845
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
