Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000026A_C03 KMC000026A_c03
(743 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180832.1| 26S proteasome regulatory subunit (RPN2), putat... 107 1e-22
dbj|BAB78498.1| 26S proteasome regulatory particle non-ATPase su... 105 7e-22
ref|NP_171973.1| 26S proteasome regulatory subunit (RPN2), putat... 104 2e-21
gb|AAL83992.1| 26S proteasome regulatory subunit [Oryza sativa] 57 3e-07
ref|NP_702521.1| 26S proteasome subunit, putative [Plasmodium fa... 37 0.39
>ref|NP_180832.1| 26S proteasome regulatory subunit (RPN2), putative; protein id:
At2g32730.1, supported by cDNA: gi_20466789 [Arabidopsis
thaliana] gi|7486095|pir||T00795 26S proteasome
regulatory subunit [imported] - Arabidopsis thaliana
gi|2914700|gb|AAC04490.1| 26S proteasome regulatory
subunit (RPN2), putative [Arabidopsis thaliana]
gi|20466790|gb|AAM20712.1| 26S proteasome regulatory
subunit [Arabidopsis thaliana]
Length = 1004
Score = 107 bits (268), Expect = 1e-22
Identities = 55/80 (68%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = -2
Query: 742 EKFIKFLQDSRYAPVKLAPSGFVLLKDLRPTEPEVLAITVTPASATSTAAGSAAGLQSS- 566
EK+IK L DSRY PVKLAPSGFVLLKDLR EPEVL++T P S S A G+AA Q +
Sbjct: 925 EKYIKLLDDSRYVPVKLAPSGFVLLKDLREHEPEVLSLTDAPTSTASPATGTAAAAQGTP 984
Query: 565 SSAMAVDEEPQPPQPFEYSS 506
+SAMAVD+EPQPPQ FEY+S
Sbjct: 985 ASAMAVDDEPQPPQAFEYAS 1004
>dbj|BAB78498.1| 26S proteasome regulatory particle non-ATPase subunit2a [Oryza
sativa (japonica cultivar-group)]
Length = 284
Score = 105 bits (262), Expect = 7e-22
Identities = 53/80 (66%), Positives = 63/80 (78%), Gaps = 1/80 (1%)
Frame = -2
Query: 742 EKFIKFLQDSRYAPVKLAPSGFVLLKDLRPTEPEVLAITVTPASATSTAAGSAAGLQ-SS 566
EKFIKFL+ RY PVKLAPSGFVLL+DL+PTE E L +T PA+ + AA + AG Q S
Sbjct: 205 EKFIKFLEGGRYEPVKLAPSGFVLLRDLKPTETEELVLTDAPATQATNAAAATAGQQGSG 264
Query: 565 SSAMAVDEEPQPPQPFEYSS 506
++AMAVDEEP PPQPFEY+S
Sbjct: 265 AAAMAVDEEPLPPQPFEYTS 284
>ref|NP_171973.1| 26S proteasome regulatory subunit (RPN2), putative; protein id:
At1g04810.1 [Arabidopsis thaliana]
gi|25347943|pir||C86181 hypothetical protein [imported] -
Arabidopsis thaliana gi|7211984|gb|AAF40455.1|AC004809_13
Strong similarity to the SEN3-like tRNA-processing
protein F24L7.13 from A. thaliana gi|2914700 on BAC
gb|AC003974. EST gb|AA712969 comes from this gene.
[Arabidopsis thaliana] gi|28393231|gb|AAO42045.1|
putative 26S proteasome regulatory subunit (RPN2)
[Arabidopsis thaliana]
Length = 1001
Score = 104 bits (259), Expect = 2e-21
Identities = 51/83 (61%), Positives = 65/83 (77%), Gaps = 4/83 (4%)
Frame = -2
Query: 742 EKFIKFLQDSRYAPVKLAPSGFVLLKDLRPTEPEVLAITVTPASATSTAAGSAAGLQ--- 572
EK+IK ++DSRY P+KLAPSGFVLL+DLRP EPEVL++T P S S A G+ A Q
Sbjct: 918 EKYIKLMEDSRYVPMKLAPSGFVLLRDLRPHEPEVLSLTDAPTSTASPAVGAEAAGQAQQ 977
Query: 571 -SSSSAMAVDEEPQPPQPFEYSS 506
+++SAMA+D+EPQPPQ FEY+S
Sbjct: 978 AATTSAMAIDDEPQPPQAFEYAS 1000
>gb|AAL83992.1| 26S proteasome regulatory subunit [Oryza sativa]
Length = 88
Score = 57.0 bits (136), Expect = 3e-07
Identities = 25/35 (71%), Positives = 31/35 (88%)
Frame = -2
Query: 742 EKFIKFLQDSRYAPVKLAPSGFVLLKDLRPTEPEV 638
EKFIKF++ SRY PVK APSGF+LL+D++PTE EV
Sbjct: 54 EKFIKFIEGSRYVPVKPAPSGFILLQDMQPTEAEV 88
>ref|NP_702521.1| 26S proteasome subunit, putative [Plasmodium falciparum 3D7]
gi|23497706|gb|AAN37245.1|AE014826_44 26S proteasome
subunit, putative [Plasmodium falciparum 3D7]
Length = 1172
Score = 36.6 bits (83), Expect = 0.39
Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 742 EKFIKFLQDSRYAPV-KLAPSGFVLLKDLRPTEP 644
EK+I+++ +SRY PV SGF++L D+ P EP
Sbjct: 1111 EKYIEYIPNSRYIPVLPTRKSGFIMLNDITPLEP 1144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 631,784,739
Number of Sequences: 1393205
Number of extensions: 13911182
Number of successful extensions: 38914
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 36561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38738
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35751090169
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
