Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000024A_C01 KMC000024A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680682.1| similar to exonuclease; protein id: At4g13885.1... 75 9e-13
gb|AAO33765.1| Werner Syndrome-like exonuclease [Arabidopsis tha... 74 2e-12
emb|CAC14871.1| exonuclease [Arabidopsis thaliana] 67 2e-10
ref|NP_193123.1| putative protein; protein id: At4g13870.1 [Arab... 64 2e-09
ref|XP_193066.1| Werner syndrome protein [Mus musculus] gi|75138... 45 6e-04
>ref|NP_680682.1| similar to exonuclease; protein id: At4g13885.1 [Arabidopsis
thaliana]
Length = 263
Score = 74.7 bits (182), Expect = 9e-13
Identities = 33/52 (63%), Positives = 43/52 (82%)
Frame = -1
Query: 528 KAFYILQLKKPNKIRLGNWETPVLSKEQLQYAATDAFASWYLYEAIKNLPDS 373
K F+ L KPN+IRLGNWE LSK+QLQYAATDA+ASW+L++ +K+LPD+
Sbjct: 208 KLFHDYGLLKPNRIRLGNWEVHPLSKQQLQYAATDAYASWHLHQVLKDLPDA 259
>gb|AAO33765.1| Werner Syndrome-like exonuclease [Arabidopsis thaliana]
Length = 288
Score = 73.6 bits (179), Expect = 2e-12
Identities = 32/46 (69%), Positives = 41/46 (88%)
Frame = -1
Query: 510 QLKKPNKIRLGNWETPVLSKEQLQYAATDAFASWYLYEAIKNLPDS 373
+L KPN+IRLGNWE LSK+QLQYAATDA+ASW+LY+ +K+LPD+
Sbjct: 239 ELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYKVLKDLPDA 284
>emb|CAC14871.1| exonuclease [Arabidopsis thaliana]
Length = 285
Score = 67.0 bits (162), Expect = 2e-10
Identities = 32/46 (69%), Positives = 39/46 (84%)
Frame = -1
Query: 510 QLKKPNKIRLGNWETPVLSKEQLQYAATDAFASWYLYEAIKNLPDS 373
+L KPN+IRLGNWE LSK+QLQYAATDA+ASW+LY K+LPD+
Sbjct: 239 ELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLY---KDLPDA 281
>ref|NP_193123.1| putative protein; protein id: At4g13870.1 [Arabidopsis thaliana]
gi|7485693|pir||T05256 hypothetical protein F18A5.260 -
Arabidopsis thaliana gi|4455316|emb|CAB36851.1| putative
protein [Arabidopsis thaliana]
gi|7268091|emb|CAB78429.1| putative protein [Arabidopsis
thaliana]
Length = 313
Score = 63.5 bits (153), Expect = 2e-09
Identities = 28/38 (73%), Positives = 34/38 (88%)
Frame = -1
Query: 510 QLKKPNKIRLGNWETPVLSKEQLQYAATDAFASWYLYE 397
+L KPN+IRLGNWE LSK+QLQYAATDA+ASW+LY+
Sbjct: 239 ELLKPNRIRLGNWEFYPLSKQQLQYAATDAYASWHLYK 276
>ref|XP_193066.1| Werner syndrome protein [Mus musculus] gi|7513876|pir||T17452
Werner syndrome protein - mouse
gi|3885838|gb|AAC78077.1| Wrn protein [Mus musculus]
Length = 1401
Score = 45.4 bits (106), Expect = 6e-04
Identities = 29/82 (35%), Positives = 42/82 (50%), Gaps = 7/82 (8%)
Frame = -1
Query: 594 IKLKDVCSLQTVFLEKVK-------NYVQKAFYILQLKKPNKIRLGNWETPVLSKEQLQY 436
+KL+ L V EK+K N + K QL K IR NW L+++Q Y
Sbjct: 147 VKLESFVELTDVANEKLKCAETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTEDQKLY 206
Query: 435 AATDAFASWYLYEAIKNLPDSS 370
AATDA+A +Y+ + NL D++
Sbjct: 207 AATDAYAGLIIYQKLGNLGDTA 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,537,670
Number of Sequences: 1393205
Number of extensions: 11015998
Number of successful extensions: 28558
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 27871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28549
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
