Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000023A_C24 KMC000023A_c24
(775 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20364.1| phosphoenolpyruvate carboxylase [Lotus japonicus] 135 2e-43
gb|AAD31452.1|AF135371_1 phosphoenol pyruvate carboxylase [Lotus... 135 2e-43
dbj|BAB89366.1| phosphoenolpyruvate carboxylase [Nicotiana sylve... 109 2e-42
gb|AAL83719.1|AF236126_1 PEP carboxylase [Vitis vinifera] 107 3e-40
pir||S68415 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 3 - Ka... 97 1e-39
>dbj|BAC20364.1| phosphoenolpyruvate carboxylase [Lotus japonicus]
Length = 961
Score = 135 bits (340), Expect(2) = 2e-43
Identities = 66/74 (89%), Positives = 70/74 (94%)
Frame = -3
Query: 704 KKLRNSLLQVAGHKEVLEGDPYLKLRLRLRDSYITTMNVFQAYTLKRIRDPNYDVKHISK 525
++ + LLQVAGHKEVLEGDPYLK RLRLRDSYITTMNVFQAYTLKRIRDPNYDVKHISK
Sbjct: 861 EETKKLLLQVAGHKEVLEGDPYLKQRLRLRDSYITTMNVFQAYTLKRIRDPNYDVKHISK 920
Query: 524 EKSQPADELVRLNP 483
EKS+PADELVRLNP
Sbjct: 921 EKSKPADELVRLNP 934
Score = 63.2 bits (152), Expect(2) = 2e-43
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 774 ALNDRLLVSEDLWPFGEQLRNKYEETKKL 688
ALNDRLLVSEDLWPFGEQLRNKYEETKKL
Sbjct: 838 ALNDRLLVSEDLWPFGEQLRNKYEETKKL 866
Score = 57.8 bits (138), Expect = 2e-07
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = -1
Query: 523 RKANQLMNL*D*TPTSEYATGLEDTLILTMKGIAAGMQNTG 401
+ A++L+ L PTSEYA GLEDTLILTMKGIAAGMQNTG
Sbjct: 924 KPADELVRL---NPTSEYAPGLEDTLILTMKGIAAGMQNTG 961
>gb|AAD31452.1|AF135371_1 phosphoenol pyruvate carboxylase [Lotus corniculatus]
Length = 957
Score = 135 bits (340), Expect(2) = 2e-43
Identities = 66/74 (89%), Positives = 70/74 (94%)
Frame = -3
Query: 704 KKLRNSLLQVAGHKEVLEGDPYLKLRLRLRDSYITTMNVFQAYTLKRIRDPNYDVKHISK 525
++ + LLQVAGHKEVLEGDPYLK RLRLRDSYITTMNVFQAYTLKRIRDPNYDVKHISK
Sbjct: 857 EETKKLLLQVAGHKEVLEGDPYLKQRLRLRDSYITTMNVFQAYTLKRIRDPNYDVKHISK 916
Query: 524 EKSQPADELVRLNP 483
EKS+PADELVRLNP
Sbjct: 917 EKSKPADELVRLNP 930
Score = 63.2 bits (152), Expect(2) = 2e-43
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -2
Query: 774 ALNDRLLVSEDLWPFGEQLRNKYEETKKL 688
ALNDRLLVSEDLWPFGEQLRNKYEETKKL
Sbjct: 834 ALNDRLLVSEDLWPFGEQLRNKYEETKKL 862
Score = 57.8 bits (138), Expect = 2e-07
Identities = 30/41 (73%), Positives = 34/41 (82%)
Frame = -1
Query: 523 RKANQLMNL*D*TPTSEYATGLEDTLILTMKGIAAGMQNTG 401
+ A++L+ L PTSEYA GLEDTLILTMKGIAAGMQNTG
Sbjct: 920 KPADELVRL---NPTSEYAPGLEDTLILTMKGIAAGMQNTG 957
>dbj|BAB89366.1| phosphoenolpyruvate carboxylase [Nicotiana sylvestris]
Length = 750
Score = 109 bits (272), Expect(3) = 2e-42
Identities = 56/82 (68%), Positives = 69/82 (83%), Gaps = 5/82 (6%)
Frame = -3
Query: 713 TNMKKLRNSLLQVAGHKEVLEGDPYLKLRLRLRDSYITTMNVFQAYTLKRIRDPNYDV-- 540
+N ++ ++ LLQ+AGHK++LEGDPYL+ RLRLRDSYITT+NV QAYTLKRIRDPNY V
Sbjct: 642 SNYEETKSLLLQIAGHKDLLEGDPYLRQRLRLRDSYITTLNVCQAYTLKRIRDPNYSVTP 701
Query: 539 -KHISKE--KSQPADELVRLNP 483
HISKE +S+PA ELV+LNP
Sbjct: 702 RPHISKEYMESKPAAELVKLNP 723
Score = 56.6 bits (135), Expect(3) = 2e-42
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = -1
Query: 484 PTSEYATGLEDTLILTMKGIAAGMQNTG 401
PTSEYA GLEDTLILTMKGIAAGMQNTG
Sbjct: 723 PTSEYAPGLEDTLILTMKGIAAGMQNTG 750
Score = 50.1 bits (118), Expect(3) = 2e-42
Identities = 23/29 (79%), Positives = 25/29 (85%)
Frame = -2
Query: 774 ALNDRLLVSEDLWPFGEQLRNKYEETKKL 688
AL D+LLVSEDLW FGEQLR+ YEETK L
Sbjct: 622 ALYDKLLVSEDLWSFGEQLRSNYEETKSL 650
>gb|AAL83719.1|AF236126_1 PEP carboxylase [Vitis vinifera]
Length = 339
Score = 107 bits (267), Expect(3) = 3e-40
Identities = 55/83 (66%), Positives = 67/83 (80%), Gaps = 6/83 (7%)
Frame = -3
Query: 713 TNMKKLRNSLLQVAGHKEVLEGDPYLKLRLRLRDSYITTMNVFQAYTLKRIRDPNYDV-- 540
TN ++ + LLQ+AGH+++LEGDPYLK RLRLRD+YITT+NV QAYTLKRIRDPNY V
Sbjct: 230 TNYEETKRLLLQIAGHRDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPNYHVME 289
Query: 539 -KHISK---EKSQPADELVRLNP 483
H+SK E S+PA ELV+LNP
Sbjct: 290 RPHLSKEIMESSKPAAELVKLNP 312
Score = 54.7 bits (130), Expect(3) = 3e-40
Identities = 25/28 (89%), Positives = 27/28 (96%)
Frame = -1
Query: 484 PTSEYATGLEDTLILTMKGIAAGMQNTG 401
PTSEYA G+EDTLILTMKGIAAG+QNTG
Sbjct: 312 PTSEYAPGMEDTLILTMKGIAAGLQNTG 339
Score = 46.2 bits (108), Expect(3) = 3e-40
Identities = 21/29 (72%), Positives = 25/29 (85%)
Frame = -2
Query: 774 ALNDRLLVSEDLWPFGEQLRNKYEETKKL 688
AL DRLLVSE+LW FG++LR YEETK+L
Sbjct: 210 ALYDRLLVSEELWLFGKRLRTNYEETKRL 238
>pir||S68415 phosphoenolpyruvate carboxylase (EC 4.1.1.31) 3 - Kalanchoe
blossfeldiana (fragment)
Length = 370
Score = 97.1 bits (240), Expect(3) = 1e-39
Identities = 52/82 (63%), Positives = 63/82 (76%), Gaps = 6/82 (7%)
Frame = -3
Query: 710 NMKKLRNSLLQVAGHKEVLEGDPYLKLRLRLRDSYITTMNVFQAYTLKRIRDPNYDV--- 540
N + +N LLQVAGHK++LEG+PYL+ RLRLRDSYITT+N QAYTLKRIRDPNY V
Sbjct: 262 NYNETKNLLLQVAGHKDLLEGNPYLRQRLRLRDSYITTLNGCQAYTLKRIRDPNYHVTVR 321
Query: 539 KHISK---EKSQPADELVRLNP 483
+SK E ++ A ELV+LNP
Sbjct: 322 PRLSKEIMESNKAAAELVKLNP 343
Score = 56.6 bits (135), Expect(3) = 1e-39
Identities = 27/28 (96%), Positives = 27/28 (96%)
Frame = -1
Query: 484 PTSEYATGLEDTLILTMKGIAAGMQNTG 401
PTSEYA GLEDTLILTMKGIAAGMQNTG
Sbjct: 343 PTSEYAPGLEDTLILTMKGIAAGMQNTG 370
Score = 53.1 bits (126), Expect(3) = 1e-39
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = -2
Query: 774 ALNDRLLVSEDLWPFGEQLRNKYEETKKL 688
AL D+LLVSEDLWPFGEQLRN Y ETK L
Sbjct: 241 ALYDKLLVSEDLWPFGEQLRNNYNETKNL 269
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 674,699,182
Number of Sequences: 1393205
Number of extensions: 15114160
Number of successful extensions: 36096
Number of sequences better than 10.0: 302
Number of HSP's better than 10.0 without gapping: 34110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35974
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
