Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000022A_C02 KMC000022A_c02
(764 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179768.1| putative cellulose synthase catalytic subunit; ... 201 1e-50
ref|NP_196549.1| cellulose synthase catalytic subunit; protein i... 195 5e-49
gb|AAM97089.1| cellulose synthase catalytic subunit [Arabidopsis... 195 5e-49
ref|NP_195645.1| cellulose synthase catalytic subunit (Ath-A); p... 195 7e-49
gb|AAL24340.1| cellulose synthase catalytic subunit (Ath-A) [Ara... 195 7e-49
>ref|NP_179768.1| putative cellulose synthase catalytic subunit; protein id:
At2g21770.1 [Arabidopsis thaliana]
gi|25412057|pir||H84604 probable cellulose synthase
catalytic subunit [imported] - Arabidopsis thaliana
gi|4417271|gb|AAD20396.1| putative cellulose synthase
catalytic subunit [Arabidopsis thaliana]
Length = 1088
Score = 201 bits (510), Expect = 1e-50
Identities = 91/101 (90%), Positives = 101/101 (99%)
Frame = -1
Query: 764 LIPPTTLLIINIVGIIVGISDAINNGYDSWGPLFGRLFFALWVVLHLYPFLKGLLGKQDR 585
LIPPTTLLIINIVG+IVG+SDAINNGYDSWGPLFGRLFFALWV++HLYPFLKGLLGKQDR
Sbjct: 986 LIPPTTLLIINIVGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDR 1045
Query: 584 MPTIVLVWSILLASILTLMWVRINPFVSRDGPVLEICGLNC 462
+PTI+LVWSILLASILTL+WVR+NPFVS+DGPVLEICGL+C
Sbjct: 1046 VPTIILVWSILLASILTLLWVRVNPFVSKDGPVLEICGLDC 1086
>ref|NP_196549.1| cellulose synthase catalytic subunit; protein id: At5g09870.1
[Arabidopsis thaliana] gi|9758965|dbj|BAB09408.1|
cellulose synthase catalytic subunit [Arabidopsis
thaliana]
Length = 1069
Score = 195 bits (496), Expect = 5e-49
Identities = 87/101 (86%), Positives = 99/101 (97%)
Frame = -1
Query: 764 LIPPTTLLIINIVGIIVGISDAINNGYDSWGPLFGRLFFALWVVLHLYPFLKGLLGKQDR 585
LIPPTTLLIIN++G+IVGISDAI+NGYDSWGPLFGRLFFA WV+LHLYPFLKGLLGKQDR
Sbjct: 968 LIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDR 1027
Query: 584 MPTIVLVWSILLASILTLMWVRINPFVSRDGPVLEICGLNC 462
MPTI+LVWSILLASILTL+WVR+NPFV++ GP+LEICGL+C
Sbjct: 1028 MPTIILVWSILLASILTLLWVRVNPFVAKGGPILEICGLDC 1068
>gb|AAM97089.1| cellulose synthase catalytic subunit [Arabidopsis thaliana]
Length = 346
Score = 195 bits (496), Expect = 5e-49
Identities = 87/101 (86%), Positives = 99/101 (97%)
Frame = -1
Query: 764 LIPPTTLLIINIVGIIVGISDAINNGYDSWGPLFGRLFFALWVVLHLYPFLKGLLGKQDR 585
LIPPTTLLIIN++G+IVGISDAI+NGYDSWGPLFGRLFFA WV+LHLYPFLKGLLGKQDR
Sbjct: 245 LIPPTTLLIINVIGVIVGISDAISNGYDSWGPLFGRLFFAFWVILHLYPFLKGLLGKQDR 304
Query: 584 MPTIVLVWSILLASILTLMWVRINPFVSRDGPVLEICGLNC 462
MPTI+LVWSILLASILTL+WVR+NPFV++ GP+LEICGL+C
Sbjct: 305 MPTIILVWSILLASILTLLWVRVNPFVAKGGPILEICGLDC 345
>ref|NP_195645.1| cellulose synthase catalytic subunit (Ath-A); protein id:
At4g39350.1, supported by cDNA: gi_2827140 [Arabidopsis
thaliana] gi|7484859|pir||T08583 cellulose synthase (EC
2.4.1.-) catalytic chain - Arabidopsis thaliana
gi|2827141|gb|AAC39335.1| cellulose synthase catalytic
subunit [Arabidopsis thaliana] gi|4914447|emb|CAB43650.1|
cellulose synthase catalytic subunit (Ath-A) [Arabidopsis
thaliana] gi|7270919|emb|CAB80598.1| cellulose synthase
catalytic subunit (Ath-A) [Arabidopsis thaliana]
Length = 1084
Score = 195 bits (495), Expect = 7e-49
Identities = 86/101 (85%), Positives = 100/101 (98%)
Frame = -1
Query: 764 LIPPTTLLIINIVGIIVGISDAINNGYDSWGPLFGRLFFALWVVLHLYPFLKGLLGKQDR 585
LIPPTTLLIINI+G+IVG+SDAI+NGYDSWGPLFGRLFFALWV++HLYPFLKG+LGKQD+
Sbjct: 982 LIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDK 1041
Query: 584 MPTIVLVWSILLASILTLMWVRINPFVSRDGPVLEICGLNC 462
MPTI++VWSILLASILTL+WVR+NPFV++ GPVLEICGLNC
Sbjct: 1042 MPTIIVVWSILLASILTLLWVRVNPFVAKGGPVLEICGLNC 1082
>gb|AAL24340.1| cellulose synthase catalytic subunit (Ath-A) [Arabidopsis thaliana]
gi|20259920|gb|AAM13307.1| cellulose synthase catalytic
subunit [Arabidopsis thaliana]
Length = 507
Score = 195 bits (495), Expect = 7e-49
Identities = 86/101 (85%), Positives = 100/101 (98%)
Frame = -1
Query: 764 LIPPTTLLIINIVGIIVGISDAINNGYDSWGPLFGRLFFALWVVLHLYPFLKGLLGKQDR 585
LIPPTTLLIINI+G+IVG+SDAI+NGYDSWGPLFGRLFFALWV++HLYPFLKG+LGKQD+
Sbjct: 405 LIPPTTLLIINIIGVIVGVSDAISNGYDSWGPLFGRLFFALWVIVHLYPFLKGMLGKQDK 464
Query: 584 MPTIVLVWSILLASILTLMWVRINPFVSRDGPVLEICGLNC 462
MPTI++VWSILLASILTL+WVR+NPFV++ GPVLEICGLNC
Sbjct: 465 MPTIIVVWSILLASILTLLWVRVNPFVAKGGPVLEICGLNC 505
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 719,094,475
Number of Sequences: 1393205
Number of extensions: 16812636
Number of successful extensions: 44635
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 42201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44535
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37254821786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
