Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000021A_C12 KMC000021A_c12
(833 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P34922|G3PC_PEA Glyceraldehyde 3-phosphate dehydrogenase, cyt... 266 2e-70
emb|CAA42103.1| glycolytic glyceraldehyde 3-phosphate dehydrogen... 266 2e-70
sp|P25861|G3PC_ANTMA Glyceraldehyde 3-phosphate dehydrogenase, c... 266 2e-70
sp|P34921|G3PC_DIACA Glyceraldehyde 3-phosphate dehydrogenase, c... 265 6e-70
emb|CAB39974.1| glyceraldehyde-3-phosphate dehydrogenase [Nicoti... 265 6e-70
>sp|P34922|G3PC_PEA Glyceraldehyde 3-phosphate dehydrogenase, cytosolic
gi|7431538|pir||T06781 glyceraldehyde-3-phosphate
dehydrogenase (phosphorylating) (EC 1.2.1.12) - garden
pea gi|169091|gb|AAA33667.1| glyceraldehyde-3-phosphate
dehydrogenase gi|1345567|emb|CAA51675.1| glyceraldehyde
3-phosphate dehydrogenase (phosphorylating) [Pisum
sativum]
Length = 338
Score = 266 bits (681), Expect = 2e-70
Identities = 141/158 (89%), Positives = 145/158 (91%)
Frame = -2
Query: 832 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 653
HSITATQKTVDGPS+KDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGM+FRVPTV
Sbjct: 182 HSITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTV 241
Query: 652 DVSVVDLTVRLEKAATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAK 473
DVSVVDLTVRLEKAATYD+IKAAIKEESEGKLKGILGYTEDDVVSTDFIGD RSSIFDAK
Sbjct: 242 DVSVVDLTVRLEKAATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDTRSSIFDAK 301
Query: 472 AGIALNDNFVKLVCVV*QPRWDTSTRVVDLIVHVAKSL 359
AGIALND FVKLV STRVVDLIVH+AK L
Sbjct: 302 AGIALNDKFVKLVSWY-DNELGYSTRVVDLIVHIAKQL 338
>emb|CAA42103.1| glycolytic glyceraldehyde 3-phosphate dehydrogenase [Antirrhinum
majus]
Length = 336
Score = 266 bits (681), Expect = 2e-70
Identities = 139/155 (89%), Positives = 144/155 (92%)
Frame = -2
Query: 832 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 653
HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTV
Sbjct: 180 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTV 239
Query: 652 DVSVVDLTVRLEKAATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAK 473
DVSVVDLTVRLEK ATY+QIKAAIKEESEGKLKGILGYTEDDVVSTDF+GD+RSSIFDAK
Sbjct: 240 DVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAK 299
Query: 472 AGIALNDNFVKLVCVV*QPRWDTSTRVVDLIVHVA 368
AGIALNDNFVKLV W STRVVDLIVH+A
Sbjct: 300 AGIALNDNFVKLVSWY-DNEWGYSTRVVDLIVHMA 333
>sp|P25861|G3PC_ANTMA Glyceraldehyde 3-phosphate dehydrogenase, cytosolic
gi|66012|pir||DESKG glyceraldehyde-3-phosphate
dehydrogenase (phosphorylating) (EC 1.2.1.12) - garden
snapdragon
Length = 337
Score = 266 bits (681), Expect = 2e-70
Identities = 139/155 (89%), Positives = 144/155 (92%)
Frame = -2
Query: 832 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 653
HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLP LNGKLTGM+FRVPTV
Sbjct: 181 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTV 240
Query: 652 DVSVVDLTVRLEKAATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAK 473
DVSVVDLTVRLEK ATY+QIKAAIKEESEGKLKGILGYTEDDVVSTDF+GD+RSSIFDAK
Sbjct: 241 DVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAK 300
Query: 472 AGIALNDNFVKLVCVV*QPRWDTSTRVVDLIVHVA 368
AGIALNDNFVKLV W STRVVDLIVH+A
Sbjct: 301 AGIALNDNFVKLVSWY-DNEWGYSTRVVDLIVHMA 334
>sp|P34921|G3PC_DIACA Glyceraldehyde 3-phosphate dehydrogenase, cytosolic
Length = 338
Score = 265 bits (677), Expect = 6e-70
Identities = 135/157 (85%), Positives = 144/157 (90%)
Frame = -2
Query: 832 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 653
HSITATQKTVDGPS KDWRGGRAASFNIIPSSTGAAKAVGKVLP+LNGKLTGM+FRVPTV
Sbjct: 181 HSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTV 240
Query: 652 DVSVVDLTVRLEKAATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAK 473
DVSVVDLTVR+EK ATY+Q+KAAIKEESEGKLKGILGYTEDDVVSTDF+GDNRSSIFDAK
Sbjct: 241 DVSVVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAK 300
Query: 472 AGIALNDNFVKLVCVV*QPRWDTSTRVVDLIVHVAKS 362
AGIALNDNF+KLV W STRVVDLI H+ K+
Sbjct: 301 AGIALNDNFIKLVSWY-DNEWGYSTRVVDLIAHIHKT 336
>emb|CAB39974.1| glyceraldehyde-3-phosphate dehydrogenase [Nicotiana tabacum]
Length = 337
Score = 265 bits (677), Expect = 6e-70
Identities = 139/155 (89%), Positives = 143/155 (91%)
Frame = -2
Query: 832 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 653
HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV
Sbjct: 181 HSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTV 240
Query: 652 DVSVVDLTVRLEKAATYDQIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAK 473
DVSVVDLTVRLEK ATYD+IKAAIKEESEGKLKGILGYTEDDVVSTDF+GDNRSSIFDAK
Sbjct: 241 DVSVVDLTVRLEKEATYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAK 300
Query: 472 AGIALNDNFVKLVCVV*QPRWDTSTRVVDLIVHVA 368
AGIAL+ NFVKLV W STRVVDLI H+A
Sbjct: 301 AGIALSKNFVKLVSWY-DNEWGYSTRVVDLIKHMA 334
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 700,072,287
Number of Sequences: 1393205
Number of extensions: 15099456
Number of successful extensions: 42317
Number of sequences better than 10.0: 1685
Number of HSP's better than 10.0 without gapping: 39860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41643
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 43201326735
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
