Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000020A_C01 KMC000020A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P92792|OM20_SOLTU Mitochondrial import receptor subunit TOM20... 82 4e-15
dbj|BAB86179.1| putative mitochondrial import receptor subunit T... 65 8e-10
ref|NP_189344.1| TOM20, putative; protein id: At3g27080.1, suppo... 62 7e-09
gb|AAM64598.1| putative TOM20 [Arabidopsis thaliana] 62 7e-09
pir||D86399 protein F17L21.18 [imported] - Arabidopsis thaliana ... 58 7e-08
>sp|P92792|OM20_SOLTU Mitochondrial import receptor subunit TOM20 (Translocase of outer
membrane 20 kDa subunit) gi|7459240|pir||T07679 protein
import receptor TOM20, mitochondrial - potato
gi|1524370|emb|CAA63223.1| TOM20 [Solanum tuberosum]
Length = 204
Score = 82.4 bits (202), Expect = 4e-15
Identities = 35/42 (83%), Positives = 39/42 (92%)
Frame = -2
Query: 429 QTQKKKKSSDLKYDIFGWIILAVGIVTWVGFAKSNLPPPPPP 304
++ KK KSSDLKYDIFGW+ILAVGIV WVGFAKSN+PPPPPP
Sbjct: 160 KSSKKTKSSDLKYDIFGWVILAVGIVAWVGFAKSNMPPPPPP 201
>dbj|BAB86179.1| putative mitochondrial import receptor subunit TOM20 (translocase
of outer membrane 20 KDA subunit) [Oryza sativa
(japonica cultivar-group)]
Length = 237
Score = 64.7 bits (156), Expect = 8e-10
Identities = 26/41 (63%), Positives = 32/41 (77%)
Frame = -2
Query: 429 QTQKKKKSSDLKYDIFGWIILAVGIVTWVGFAKSNLPPPPP 307
Q++KKKK SD YD+FGW++L VG+V WVG AKSN PP P
Sbjct: 191 QSRKKKKDSDFWYDVFGWVVLGVGMVVWVGLAKSNAPPQAP 231
>ref|NP_189344.1| TOM20, putative; protein id: At3g27080.1, supported by cDNA:
30812., supported by cDNA: gi_14532805, supported by
cDNA: gi_19310822 [Arabidopsis thaliana]
gi|13631842|sp|P82874|O203_ARATH Mitochondrial import
receptor subunit TOM20-3 (Translocase of outer membrane
20 kDa subunit 3) gi|9279631|dbj|BAB01089.1| TOM20-like
protein [Arabidopsis thaliana]
gi|11044965|emb|CAC14430.1| TOM20-3 protein [Arabidopsis
thaliana] gi|14532806|gb|AAK64184.1| putative TOM20
protein [Arabidopsis thaliana]
gi|19310823|gb|AAL85142.1| putative TOM20 protein
[Arabidopsis thaliana]
Length = 202
Score = 61.6 bits (148), Expect = 7e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = -2
Query: 420 KKKKSSDLKYDIFGWIILAVGIVTWVGFAKSNLPPPPP 307
K KKSSD KYD GW+ILA+G+V W+ FAK+N+P PP
Sbjct: 164 KNKKSSDAKYDAMGWVILAIGVVAWISFAKANVPVSPP 201
>gb|AAM64598.1| putative TOM20 [Arabidopsis thaliana]
Length = 202
Score = 61.6 bits (148), Expect = 7e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = -2
Query: 420 KKKKSSDLKYDIFGWIILAVGIVTWVGFAKSNLPPPPP 307
K KKSSD KYD GW+ILA+G+V W+ FAK+N+P PP
Sbjct: 164 KNKKSSDAKYDAMGWVILAIGVVAWISFAKANVPVSPP 201
>pir||D86399 protein F17L21.18 [imported] - Arabidopsis thaliana
gi|9802543|gb|AAF99745.1|AC004557_24 F17L21.18
[Arabidopsis thaliana]
Length = 209
Score = 58.2 bits (139), Expect = 7e-08
Identities = 26/45 (57%), Positives = 34/45 (74%)
Frame = -2
Query: 435 IFQTQKKKKSSDLKYDIFGWIILAVGIVTWVGFAKSNLPPPPPPR 301
+ ++KKK++++ YD+ GWIILA GIV WVG AKS L PPPP R
Sbjct: 166 VSSSKKKKRNTEFTYDVCGWIILACGIVAWVGMAKS-LGPPPPAR 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,553,695
Number of Sequences: 1393205
Number of extensions: 10886404
Number of successful extensions: 48329
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 34066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42679
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
