Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000019A_C01 KMC000019A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62449.1| unknown [Arabidopsis thaliana] 163 2e-39
ref|NP_180619.1| unknown protein; protein id: At2g30610.1 [Arabi... 120 2e-26
gb|AAB47544.1| MigA [Dictyostelium discoideum] 48 6e-09
gb|AAO51756.1| similar to Dictyostelium discoideum (Slime mold).... 50 3e-07
ref|NP_609369.1| CG5604-PA [Drosophila melanogaster] gi|7297647|... 42 0.004
>gb|AAM62449.1| unknown [Arabidopsis thaliana]
Length = 809
Score = 163 bits (412), Expect = 2e-39
Identities = 72/111 (64%), Positives = 89/111 (79%)
Frame = -2
Query: 568 ITASSPHSRYTDPKVLVSRTYQGTCFAGPRLENGHNSTWWMVDLGQDHQLMCNYYTLRQD 389
IT+SSP SR+TDPK L S+ Y GT FAGPR+E+GH S+WW+VDLG++HQLMCNYYT RQD
Sbjct: 666 ITSSSPTSRFTDPKALASKAYAGTSFAGPRMEDGHISSWWVVDLGEEHQLMCNYYTFRQD 725
Query: 388 GSKAFPRCWNIQGSLDGKSWKNLRVHENDWTVCKPGQFAILAHNWPQRTAS 236
GS+AF R W QGS+DGK+W +LRVHE+D T+CK GQFA +WP A+
Sbjct: 726 GSRAFTRFWKFQGSMDGKTWTDLRVHEDDQTMCKAGQFA----SWPITAAN 772
Score = 83.6 bits (205), Expect = 2e-15
Identities = 40/66 (60%), Positives = 45/66 (67%)
Frame = -3
Query: 336 RVGRT*ESMKMTGQCANLVNLPSWPITGPNALLPFRYFRVVLTGSTTDATNPWNLCICYL 157
RV ++M GQ A SWPIT NALLPFR+FR+VLTG T D + PWN CICYL
Sbjct: 749 RVHEDDQTMCKAGQFA------SWPITAANALLPFRFFRLVLTGPTADTSTPWNFCICYL 802
Query: 156 ELYGYF 139
ELYGYF
Sbjct: 803 ELYGYF 808
>ref|NP_180619.1| unknown protein; protein id: At2g30610.1 [Arabidopsis thaliana]
gi|25408093|pir||E84710 hypothetical protein At2g30610
[imported] - Arabidopsis thaliana
gi|1946358|gb|AAB63076.1| unknown protein [Arabidopsis
thaliana]
Length = 114
Score = 120 bits (300), Expect = 2e-26
Identities = 51/81 (62%), Positives = 65/81 (79%)
Frame = -2
Query: 478 LENGHNSTWWMVDLGQDHQLMCNYYTLRQDGSKAFPRCWNIQGSLDGKSWKNLRVHENDW 299
+E+GH S+WW+VDLG++HQLMCNYYT RQDGS+AF R W QGS+DGK+W +LRVHE+D
Sbjct: 1 MEDGHISSWWVVDLGEEHQLMCNYYTFRQDGSRAFTRFWKFQGSMDGKTWTDLRVHEDDQ 60
Query: 298 TVCKPGQFAILAHNWPQRTAS 236
T+CK GQFA +WP A+
Sbjct: 61 TMCKAGQFA----SWPITAAN 77
Score = 83.6 bits (205), Expect = 2e-15
Identities = 40/66 (60%), Positives = 45/66 (67%)
Frame = -3
Query: 336 RVGRT*ESMKMTGQCANLVNLPSWPITGPNALLPFRYFRVVLTGSTTDATNPWNLCICYL 157
RV ++M GQ A SWPIT NALLPFR+FR+VLTG T D + PWN CICYL
Sbjct: 54 RVHEDDQTMCKAGQFA------SWPITAANALLPFRFFRLVLTGPTADTSTPWNFCICYL 107
Query: 156 ELYGYF 139
ELYGYF
Sbjct: 108 ELYGYF 113
>gb|AAB47544.1| MigA [Dictyostelium discoideum]
Length = 813
Score = 48.1 bits (113), Expect(2) = 6e-09
Identities = 24/72 (33%), Positives = 39/72 (53%), Gaps = 2/72 (2%)
Frame = -2
Query: 460 STWWMVDLGQDHQLMCNYYTLRQDGSKAFP--RCWNIQGSLDGKSWKNLRVHENDWTVCK 287
++W M+DLG + ++ YYT+R S R W+ QGS +G+ W L+ H ND ++
Sbjct: 701 ASWVMIDLGPNRTVVPMYYTIRHGLSYKSDSLRTWDFQGSTNGEQWTVLKRHTNDPSL-- 758
Query: 286 PGQFAILAHNWP 251
+ H+WP
Sbjct: 759 --NYKYATHSWP 768
Score = 33.5 bits (75), Expect(2) = 6e-09
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = -3
Query: 270 SWPITGPNALLPFRYFRVVLTGSTTDATNPWNLCICYLELYG 145
SWP+TG FRYFR++ TG ++ N L I LE+YG
Sbjct: 766 SWPVTGCETA--FRYFRILQTGKNSNNRN--FLVIGGLEIYG 803
>gb|AAO51756.1| similar to Dictyostelium discoideum (Slime mold). MigA
Length = 602
Score = 49.7 bits (117), Expect(2) = 3e-07
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Frame = -2
Query: 460 STWWMVDLGQDHQLMCNYYTLRQDGSK-----AFPRCWNIQGSLDGKSWKNLRVHEND 302
++++ VDLG H L YY+LR G A P+ W + GSLDG+ W LR H ND
Sbjct: 431 NSFFCVDLGVKHVLCPTYYSLRYGGDSQGSIYAAPKNWQLLGSLDGQEWTLLRDHSND 488
Score = 26.2 bits (56), Expect(2) = 3e-07
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 234 FRYFRVVLTGSTTDATNPWNLCICYLELYG 145
+RY +++ TG N LC+C E+YG
Sbjct: 508 YRYLKILQTGPNQRDGN--ELCLCCFEVYG 535
>ref|NP_609369.1| CG5604-PA [Drosophila melanogaster] gi|7297647|gb|AAF52899.1|
CG5604-PA [Drosophila melanogaster]
Length = 2727
Score = 42.4 bits (98), Expect = 0.004
Identities = 25/79 (31%), Positives = 40/79 (49%), Gaps = 2/79 (2%)
Frame = -2
Query: 466 HNSTWWMVDLGQDHQLMCNYYTLR--QDGSKAFPRCWNIQGSLDGKSWKNLRVHENDWTV 293
+ W+ +DLG ++ YTLR + ++ R W +QGS DG +W L H +D ++
Sbjct: 1190 NKKAWFAIDLGV--YIIPTAYTLRHARGYGRSALRNWLLQGSKDGSTWTTLSTHVDDKSL 1247
Query: 292 CKPGQFAILAHNWPQRTAS 236
+PG A WP A+
Sbjct: 1248 VEPGSTA----TWPINCAT 1262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,396,117
Number of Sequences: 1393205
Number of extensions: 13763814
Number of successful extensions: 37423
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 36181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37406
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
