Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000018A_C01 KMC000018A_c01
(808 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC28707.1| unnamed protein product [Mus musculus] 36 0.76
pir||T17157 CL2AA protein - rat gi|3695123|gb|AAC62654.1| CL2AA ... 36 0.76
pir||T46611 CL2BB protein - rat gi|3695131|gb|AAC62658.1| CL2BB ... 36 0.76
pir||T17158 CL2AB protein - rat gi|3695125|gb|AAC62655.1| CL2AB ... 36 0.76
pir||T17185 CL2BC protein - rat gi|3695133|gb|AAC62659.1| CL2BC ... 36 0.76
>dbj|BAC28707.1| unnamed protein product [Mus musculus]
Length = 470
Score = 35.8 bits (81), Expect = 0.76
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = -1
Query: 196 GHSILSCLFALKWASIVIFVKAMTVTSDFLFNSINRVRICKIFLFHLA 53
G L CL L W+ ++FV TV +LF + N + IF+FH A
Sbjct: 44 GAFALLCLLGLTWSFGLLFVNEETVVMAYLFTAFNAFQGLFIFIFHCA 91
>pir||T17157 CL2AA protein - rat gi|3695123|gb|AAC62654.1| CL2AA [Rattus
norvegicus]
Length = 1452
Score = 35.8 bits (81), Expect = 0.76
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = -1
Query: 196 GHSILSCLFALKWASIVIFVKAMTVTSDFLFNSINRVRICKIFLFHLA 53
G L CL L W+ ++FV TV +LF + N + IF+FH A
Sbjct: 1043 GAFALLCLLGLTWSFGLLFVNEETVVMAYLFTAFNAFQGLFIFIFHCA 1090
>pir||T46611 CL2BB protein - rat gi|3695131|gb|AAC62658.1| CL2BB [Rattus
norvegicus]
Length = 1435
Score = 35.8 bits (81), Expect = 0.76
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = -1
Query: 196 GHSILSCLFALKWASIVIFVKAMTVTSDFLFNSINRVRICKIFLFHLA 53
G L CL L W+ ++FV TV +LF + N + IF+FH A
Sbjct: 1058 GAFALLCLLGLTWSFGLLFVNEETVVMAYLFTAFNAFQGLFIFIFHCA 1105
>pir||T17158 CL2AB protein - rat gi|3695125|gb|AAC62655.1| CL2AB [Rattus
norvegicus]
Length = 1420
Score = 35.8 bits (81), Expect = 0.76
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = -1
Query: 196 GHSILSCLFALKWASIVIFVKAMTVTSDFLFNSINRVRICKIFLFHLA 53
G L CL L W+ ++FV TV +LF + N + IF+FH A
Sbjct: 1043 GAFALLCLLGLTWSFGLLFVNEETVVMAYLFTAFNAFQGLFIFIFHCA 1090
>pir||T17185 CL2BC protein - rat gi|3695133|gb|AAC62659.1| CL2BC [Rattus
norvegicus]
Length = 1478
Score = 35.8 bits (81), Expect = 0.76
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = -1
Query: 196 GHSILSCLFALKWASIVIFVKAMTVTSDFLFNSINRVRICKIFLFHLA 53
G L CL L W+ ++FV TV +LF + N + IF+FH A
Sbjct: 1058 GAFALLCLLGLTWSFGLLFVNEETVVMAYLFTAFNAFQGLFIFIFHCA 1105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 660,831,804
Number of Sequences: 1393205
Number of extensions: 13813981
Number of successful extensions: 33759
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 32568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33754
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41176381974
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
