Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000017A_C04 KMC000017A_c04
(936 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567097.1| putative protein; protein id: At3g60260.1, supp... 99 9e-20
pir||T49221 hypothetical protein F27H5.50 - Arabidopsis thaliana... 99 9e-20
ref|NP_566027.1| expressed protein; protein id: At2g44770.1, sup... 98 2e-19
pir||T01604 hypothetical protein At2g44770 [imported] - Arabidop... 98 2e-19
gb|AAL06934.1| At2g44770/F16B22.26 [Arabidopsis thaliana] gi|179... 95 1e-18
>ref|NP_567097.1| putative protein; protein id: At3g60260.1, supported by cDNA:
104796., supported by cDNA: gi_17473881, supported by
cDNA: gi_20148670 [Arabidopsis thaliana]
gi|17473882|gb|AAL38361.1| putative protein [Arabidopsis
thaliana] gi|20148671|gb|AAM10226.1| putative protein
[Arabidopsis thaliana] gi|21536589|gb|AAM60921.1|
unknown [Arabidopsis thaliana]
Length = 266
Score = 99.0 bits (245), Expect = 9e-20
Identities = 41/53 (77%), Positives = 47/53 (88%)
Frame = -2
Query: 530 LWNAAFPEEKLHGLISDQWKEMDWQAKDPSTDFRGGGFISLENFLFFSRNFPE 372
LW AFPEE+LHG++SDQWKEM WQ KDPSTDFRGGGFISLEN L+F+R FP+
Sbjct: 94 LWKLAFPEEELHGIVSDQWKEMGWQGKDPSTDFRGGGFISLENLLYFARKFPK 146
>pir||T49221 hypothetical protein F27H5.50 - Arabidopsis thaliana
gi|7576202|emb|CAB87863.1| putative protein [Arabidopsis
thaliana]
Length = 250
Score = 99.0 bits (245), Expect = 9e-20
Identities = 41/53 (77%), Positives = 47/53 (88%)
Frame = -2
Query: 530 LWNAAFPEEKLHGLISDQWKEMDWQAKDPSTDFRGGGFISLENFLFFSRNFPE 372
LW AFPEE+LHG++SDQWKEM WQ KDPSTDFRGGGFISLEN L+F+R FP+
Sbjct: 94 LWKLAFPEEELHGIVSDQWKEMGWQGKDPSTDFRGGGFISLENLLYFARKFPK 146
>ref|NP_566027.1| expressed protein; protein id: At2g44770.1, supported by cDNA:
36996., supported by cDNA: gi_15810013, supported by
cDNA: gi_17981658 [Arabidopsis thaliana]
gi|20197031|gb|AAC27479.2| expressed protein
[Arabidopsis thaliana] gi|21593197|gb|AAM65146.1|
unknown [Arabidopsis thaliana]
Length = 266
Score = 98.2 bits (243), Expect = 2e-19
Identities = 42/53 (79%), Positives = 47/53 (88%)
Frame = -2
Query: 536 RALWNAAFPEEKLHGLISDQWKEMDWQAKDPSTDFRGGGFISLENFLFFSRNF 378
R LW +FPEE+LHGLIS+QWKEM WQ KDPSTDFRGGGFISLEN L+F+RNF
Sbjct: 92 RELWKLSFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNF 144
>pir||T01604 hypothetical protein At2g44770 [imported] - Arabidopsis thaliana
Length = 250
Score = 98.2 bits (243), Expect = 2e-19
Identities = 42/53 (79%), Positives = 47/53 (88%)
Frame = -2
Query: 536 RALWNAAFPEEKLHGLISDQWKEMDWQAKDPSTDFRGGGFISLENFLFFSRNF 378
R LW +FPEE+LHGLIS+QWKEM WQ KDPSTDFRGGGFISLEN L+F+RNF
Sbjct: 92 RELWKLSFPEEELHGLISEQWKEMGWQGKDPSTDFRGGGFISLENLLYFARNF 144
>gb|AAL06934.1| At2g44770/F16B22.26 [Arabidopsis thaliana]
gi|17981659|gb|AAL51113.1|AF458341_1 At2g44770/F16B22.26
[Arabidopsis thaliana]
Length = 266
Score = 95.1 bits (235), Expect = 1e-18
Identities = 41/53 (77%), Positives = 46/53 (86%)
Frame = -2
Query: 536 RALWNAAFPEEKLHGLISDQWKEMDWQAKDPSTDFRGGGFISLENFLFFSRNF 378
R LW +FPEE+LHGLIS+QWKEM WQ KD STDFRGGGFISLEN L+F+RNF
Sbjct: 92 RELWKLSFPEEELHGLISEQWKEMGWQGKDQSTDFRGGGFISLENLLYFARNF 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 849,449,920
Number of Sequences: 1393205
Number of extensions: 19145116
Number of successful extensions: 43382
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 41458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43350
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52137106016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
