Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000016A_C02 KMC000016A_c02
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB26278.2| integrin beta 5 subunit [Rattus sp.] 33 2.1
gb|AAF03943.1|AF154920_1 putative adhesin MAA1 [Mycoplasma arthr... 32 6.2
ref|NP_570344.1| tail protein A [Cyanophage P60] gi|18478733|gb|... 32 8.2
gb|AAL70305.1| envelope glycoprotein; gp120 [Human immunodeficie... 32 8.2
gb|AAL70307.1| envelope glycoprotein; gp120 [Human immunodeficie... 32 8.2
>gb|AAB26278.2| integrin beta 5 subunit [Rattus sp.]
Length = 200
Score = 33.5 bits (75), Expect = 2.1
Identities = 15/36 (41%), Positives = 21/36 (57%)
Frame = -2
Query: 505 CAYNFFAITCIVYFCQLRLLILVCCLGLFIFTPRVS 398
CA+ + + C+V F LL+LVC GL +P VS
Sbjct: 65 CAWCLWGVVCVVPFLPCCLLLLVCLCGLLAASPGVS 100
>gb|AAF03943.1|AF154920_1 putative adhesin MAA1 [Mycoplasma arthritidis]
Length = 746
Score = 32.0 bits (71), Expect = 6.2
Identities = 23/66 (34%), Positives = 32/66 (47%), Gaps = 2/66 (3%)
Frame = +3
Query: 381 KTPLVD-ETRGVKM-NKPRQHTNISSLSWQKYTIHVMAKKLYAQLGTCIFVRCPRDSHNG 554
K L+D E G+ + NK R+ N + L +K + + + L T F P D HNG
Sbjct: 474 KKVLIDLEKLGIDIHNKIREQNNQAPLEDKKAPSGTVEENIDPDLNTEGFKETPSDDHNG 533
Query: 555 GASEAI 572
GAS I
Sbjct: 534 GASSII 539
>ref|NP_570344.1| tail protein A [Cyanophage P60] gi|18478733|gb|AAL73282.1| tail
protein A [Cyanophage P60]
Length = 680
Score = 31.6 bits (70), Expect = 8.2
Identities = 25/77 (32%), Positives = 34/77 (43%)
Frame = +3
Query: 345 PFVT*LVTRLHNKTPLVDETRGVKMNKPRQHTNISSLSWQKYTIHVMAKKLYAQLGTCIF 524
P+VT L+T +N +P D R ++S W + K+YA LGT F
Sbjct: 244 PYVT-LLTPGNNTSPFPDTIR----------VDVSGEGWDIKVTKQIQSKVYANLGTAQF 292
Query: 525 VRCPRDSHNGGASEAII 575
P D GGAS + I
Sbjct: 293 T-TPVDQSGGGASTSDI 308
>gb|AAL70305.1| envelope glycoprotein; gp120 [Human immunodeficiency virus type 1]
Length = 207
Score = 31.6 bits (70), Expect = 8.2
Identities = 24/65 (36%), Positives = 33/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 402 TRGVKMNKPRQ-HTNISSLSWQKYTIHVMAKKLYAQLG---TCIFVRCPRDSHNGGASEA 569
T G + PRQ H NIS W K T+ ++ KKL QLG T IF + +GG E
Sbjct: 51 TTGDMIGDPRQAHCNISKAEWNK-TLILIVKKLREQLGSNKTIIF-----NQSSGGDPEI 104
Query: 570 IITDY 584
++ +
Sbjct: 105 VMHSF 109
>gb|AAL70307.1| envelope glycoprotein; gp120 [Human immunodeficiency virus type 1]
Length = 206
Score = 31.6 bits (70), Expect = 8.2
Identities = 24/65 (36%), Positives = 33/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 402 TRGVKMNKPRQ-HTNISSLSWQKYTIHVMAKKLYAQLG---TCIFVRCPRDSHNGGASEA 569
T G + PRQ H NIS W K T+ ++ KKL QLG T IF + +GG E
Sbjct: 50 TTGDMIGDPRQAHCNISKAEWNK-TLILIVKKLREQLGSNKTIIF-----NQSSGGDPEI 103
Query: 570 IITDY 584
++ +
Sbjct: 104 VMHSF 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,577,165
Number of Sequences: 1393205
Number of extensions: 10711093
Number of successful extensions: 26780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26749
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
