Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000015A_C02 KMC000015A_c02
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q42669|ACOC_CUCMC Aconitase (Aconitate hydratase) (Citrate hy... 150 2e-35
gb|AAM97080.1| cytoplasmic aconitate hydratase [Arabidopsis thal... 143 2e-33
ref|NP_178634.1| cytoplasmic aconitate hydratase; protein id: At... 143 2e-33
sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic (Citrate h... 139 3e-32
emb|CAA58046.1| aconitase [Arabidopsis thaliana] 138 7e-32
>sp|Q42669|ACOC_CUCMC Aconitase (Aconitate hydratase) (Citrate hydro-lyase)
gi|1084317|pir||S49849 aconitate hydratase (EC 4.2.1.3)
- muskmelon (fragment) gi|599723|emb|CAA58047.1|
aconitase [Cucumis melo]
Length = 764
Score = 150 bits (378), Expect = 2e-35
Identities = 70/81 (86%), Positives = 76/81 (93%)
Frame = -1
Query: 658 PLCFKSGEDADTLGLTGHERFTIDLPSSVNEIRPGQDVTVVTDNGKSFQCTLRFDTEVEL 479
PLCFK+GEDAD+LGLTGHERFTIDLPS+V EIRPGQDV VVTD GKSF C LRFDTEVEL
Sbjct: 684 PLCFKAGEDADSLGLTGHERFTIDLPSNVGEIRPGQDVAVVTDTGKSFSCILRFDTEVEL 743
Query: 478 AYFNHGGILQYVIRNLINAKH 416
AYF+HGGILQYVIRNLI++KH
Sbjct: 744 AYFDHGGILQYVIRNLIHSKH 764
>gb|AAM97080.1| cytoplasmic aconitate hydratase [Arabidopsis thaliana]
Length = 990
Score = 143 bits (360), Expect = 2e-33
Identities = 66/76 (86%), Positives = 71/76 (92%)
Frame = -1
Query: 658 PLCFKSGEDADTLGLTGHERFTIDLPSSVNEIRPGQDVTVVTDNGKSFQCTLRFDTEVEL 479
PLCFKSGEDADTLGLTGHER+TI LP+ ++EIRPGQDVTV TDNGKSF CT+RFDTEVEL
Sbjct: 912 PLCFKSGEDADTLGLTGHERYTIHLPTDISEIRPGQDVTVTTDNGKSFTCTVRFDTEVEL 971
Query: 478 AYFNHGGILQYVIRNL 431
AYFNHGGIL YVIRNL
Sbjct: 972 AYFNHGGILPYVIRNL 987
>ref|NP_178634.1| cytoplasmic aconitate hydratase; protein id: At2g05710.1 [Arabidopsis
thaliana] gi|25291948|pir||B84471 cytoplasmic aconitate
hydratase [imported] - Arabidopsis thaliana
gi|4586021|gb|AAD25640.1| cytoplasmic aconitate hydratase
[Arabidopsis thaliana]
Length = 898
Score = 143 bits (360), Expect = 2e-33
Identities = 66/76 (86%), Positives = 71/76 (92%)
Frame = -1
Query: 658 PLCFKSGEDADTLGLTGHERFTIDLPSSVNEIRPGQDVTVVTDNGKSFQCTLRFDTEVEL 479
PLCFKSGEDADTLGLTGHER+TI LP+ ++EIRPGQDVTV TDNGKSF CT+RFDTEVEL
Sbjct: 820 PLCFKSGEDADTLGLTGHERYTIHLPTDISEIRPGQDVTVTTDNGKSFTCTVRFDTEVEL 879
Query: 478 AYFNHGGILQYVIRNL 431
AYFNHGGIL YVIRNL
Sbjct: 880 AYFNHGGILPYVIRNL 895
>sp|P49608|ACOC_CUCMA Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase)
gi|7437043|pir||T10101 aconitate hydratase (EC 4.2.1.3) -
cucurbit gi|868003|dbj|BAA06108.1| aconitase [Cucurbita
cv. Kurokawa Amakuri]
Length = 898
Score = 139 bits (350), Expect = 3e-32
Identities = 64/77 (83%), Positives = 72/77 (93%)
Frame = -1
Query: 658 PLCFKSGEDADTLGLTGHERFTIDLPSSVNEIRPGQDVTVVTDNGKSFQCTLRFDTEVEL 479
PLCFKSGEDAD+LGLTGHER+TIDLP +++IRPGQDVTV TD+GKSF CT+RFDTEVEL
Sbjct: 820 PLCFKSGEDADSLGLTGHERYTIDLPDDISKIRPGQDVTVTTDSGKSFTCTVRFDTEVEL 879
Query: 478 AYFNHGGILQYVIRNLI 428
AYFN+GGIL YVIRNLI
Sbjct: 880 AYFNNGGILPYVIRNLI 896
>emb|CAA58046.1| aconitase [Arabidopsis thaliana]
Length = 919
Score = 138 bits (347), Expect = 7e-32
Identities = 64/77 (83%), Positives = 74/77 (95%)
Frame = -1
Query: 658 PLCFKSGEDADTLGLTGHERFTIDLPSSVNEIRPGQDVTVVTDNGKSFQCTLRFDTEVEL 479
PLCFK+GEDA+TLGLTG E +TI+LP++V+EI+PGQDVTVVT+NGKSF CTLRFDTEVEL
Sbjct: 841 PLCFKAGEDAETLGLTGQELYTIELPNNVSEIKPGQDVTVVTNNGKSFTCTLRFDTEVEL 900
Query: 478 AYFNHGGILQYVIRNLI 428
AYF+HGGILQYVIRNLI
Sbjct: 901 AYFDHGGILQYVIRNLI 917
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,229,945
Number of Sequences: 1393205
Number of extensions: 10711988
Number of successful extensions: 26862
Number of sequences better than 10.0: 157
Number of HSP's better than 10.0 without gapping: 25787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26786
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
