Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000013A_C01 KMC000013A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_703411.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.19
ref|NP_004547.1| nuclear factor of kappa light polypeptide gene ... 35 0.54
ref|NP_701989.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.71
ref|XP_237064.1| similar to RIKEN cDNA 2010300C02 gene [Mus musc... 35 0.71
ref|NP_681078.1| ORF_ID:tll0287~unknown protein [Thermosynechoco... 32 7.9
>ref|NP_703411.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23504551|emb|CAD51431.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3008
Score = 37.0 bits (84), Expect = 0.19
Identities = 24/67 (35%), Positives = 34/67 (49%)
Frame = +2
Query: 62 KCKQVSIKF*TREFTEKKQIKDYNRNLTENEHHIS*KWSMYSMCQHYCRSENLSQDAVTT 241
KC+ +SIK TEK +IKD N N N H + Y++ H +N+++ VTT
Sbjct: 2224 KCESLSIK---ESHTEKDEIKDDNNNNNNNNKH----YGYYNIDDH----KNINKQEVTT 2272
Query: 242 HRANPLN 262
AN N
Sbjct: 2273 QDANSSN 2279
>ref|NP_004547.1| nuclear factor of kappa light polypeptide gene enhancer in B-cells
inhibitor, epsilon [Homo sapiens]
gi|1934601|gb|AAC51216.1| I kappa B epsilon [Homo
sapiens]
Length = 500
Score = 35.4 bits (80), Expect = 0.54
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = -3
Query: 588 PEHEKPEAGPDHCQPSQIDGKSSVESLQPISDIGRTREKVPLFEHGVSHCRS--QEEEKN 415
P +P AG CQ GK++ SL+P D +T + P G+S R E E++
Sbjct: 97 PGRRRPRAGRPLCQADPQPGKAARRSLEP--DPAQTGPR-PARAAGMSEARKGPDEAEES 153
Query: 414 QRESKIRQLGGSRGVPEN 361
Q +S I L R +PE+
Sbjct: 154 QYDSGIESLRSLRSLPES 171
>ref|NP_701989.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497165|gb|AAN36713.1|AE014817_36 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 4405
Score = 35.0 bits (79), Expect = 0.71
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +2
Query: 122 KDYNRNLTENEHHIS*KWSMYSMCQHYCRSENLSQDAVTTHRANPLNSYA 271
K+YN ++ EN+ +IS K S Y M Y S N S D+ + N N ++
Sbjct: 2556 KEYNNSIIENKENISSKSSSYDMYDSYSISSNGSSDSNLSSDMNEFNFFS 2605
>ref|XP_237064.1| similar to RIKEN cDNA 2010300C02 gene [Mus musculus] [Rattus
norvegicus]
Length = 1237
Score = 35.0 bits (79), Expect = 0.71
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = -3
Query: 561 PDHCQPSQIDGKSSVESLQPISDIGRTREKVPLFEHGVSHCRSQEEEKNQRESKIRQLGG 382
PDH + + ++ SL P+ D E ++ + + + +NQR SK+R+L
Sbjct: 283 PDHMSDASVSSRTLDGSLAPVVDFSHPPEFSSCLDNSAAKHKLLVKPRNQRSSKLRRLSS 342
Query: 381 SRGVP 367
G+P
Sbjct: 343 VIGLP 347
>ref|NP_681078.1| ORF_ID:tll0287~unknown protein [Thermosynechococcus elongatus BP-1]
gi|22294008|dbj|BAC07840.1| ORF_ID:tll0287~unknown
protein [Thermosynechococcus elongatus BP-1]
Length = 191
Score = 31.6 bits (70), Expect = 7.9
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 56 GWKCKQVSIKF*TREFTEKKQIKDYNRNLTENEHHIS*KWSMYSMCQHYCRSENLSQDAV 235
GW+ +QV++K+ + + N +N HH+ W HY R ++ +
Sbjct: 83 GWQVRQVALKYRNPNHAPRTALDVQALNQFDNNHHLQAFWQTDKEGVHYFRRIDVQASCL 142
Query: 236 TTHRA 250
H A
Sbjct: 143 ACHGA 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,693,833
Number of Sequences: 1393205
Number of extensions: 11377705
Number of successful extensions: 29280
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 28181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29258
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
