Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000012A_C01 KMC000012A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.3... 85 5e-16
pir||B86234 hypothetical protein [imported] - Arabidopsis thalia... 85 5e-16
ref|NP_172468.2| leucine-rich repeat transmembrane protein kinas... 85 5e-16
ref|NP_177363.1| leucine-rich repeat transmembrane protein kinas... 50 3e-05
gb|AAC36318.1| leucine-rich receptor-like protein kinase [Malus ... 47 2e-04
>gb|AAL12626.1| leucine-rich repeat receptor-like kinase F21M12.36 [Arabidopsis
thaliana]
Length = 977
Score = 85.1 bits (209), Expect = 5e-16
Identities = 40/66 (60%), Positives = 53/66 (79%)
Frame = -1
Query: 566 VDCRIPEMYKEEACMVLRTAVLCTATLPALRPTMRAVVQQLEDAEPCKLVGIVISKDGSG 387
VD +I EMY+E+A +LR A++CTA LP LRPTMR+VVQ +EDAEPC+L+GIVISK+
Sbjct: 912 VDKKIGEMYREDAVKMLRIAIICTARLPGLRPTMRSVVQMIEDAEPCRLMGIVISKESDV 971
Query: 386 KKIELN 369
K E++
Sbjct: 972 KVKEIS 977
>pir||B86234 hypothetical protein [imported] - Arabidopsis thaliana
gi|2160189|gb|AAB60752.1| Similar to A. thaliana
receptor-like protein kinase (gb|RLK5_ARATH). ESTs
gb|ATTS0475,gb|ATTS4362 come from this gene. [Arabidopsis
thaliana]
Length = 921
Score = 85.1 bits (209), Expect = 5e-16
Identities = 40/66 (60%), Positives = 53/66 (79%)
Frame = -1
Query: 566 VDCRIPEMYKEEACMVLRTAVLCTATLPALRPTMRAVVQQLEDAEPCKLVGIVISKDGSG 387
VD +I EMY+E+A +LR A++CTA LP LRPTMR+VVQ +EDAEPC+L+GIVISK+
Sbjct: 856 VDKKIGEMYREDAVKMLRIAIICTARLPGLRPTMRSVVQMIEDAEPCRLMGIVISKESDV 915
Query: 386 KKIELN 369
K E++
Sbjct: 916 KVKEIS 921
>ref|NP_172468.2| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g09970.1, supported by cDNA: gi_17065207
[Arabidopsis thaliana] gi|17065208|gb|AAL32758.1| Unknown
protein [Arabidopsis thaliana]
Length = 976
Score = 85.1 bits (209), Expect = 5e-16
Identities = 40/66 (60%), Positives = 53/66 (79%)
Frame = -1
Query: 566 VDCRIPEMYKEEACMVLRTAVLCTATLPALRPTMRAVVQQLEDAEPCKLVGIVISKDGSG 387
VD +I EMY+E+A +LR A++CTA LP LRPTMR+VVQ +EDAEPC+L+GIVISK+
Sbjct: 911 VDKKIGEMYREDAVKMLRIAIICTARLPGLRPTMRSVVQMIEDAEPCRLMGIVISKESDV 970
Query: 386 KKIELN 369
K E++
Sbjct: 971 KVKEIS 976
>ref|NP_177363.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At1g72180.1 [Arabidopsis thaliana]
gi|25406152|pir||C96745 hypothetical protein T9N14.3
[imported] - Arabidopsis thaliana
gi|12323667|gb|AAG51800.1|AC067754_16 leucine-rich
receptor-like protein kinase, putative; 28019-31149
[Arabidopsis thaliana]
Length = 977
Score = 49.7 bits (117), Expect = 3e-05
Identities = 27/62 (43%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Frame = -1
Query: 566 VDCRIPEMYKEEACM-VLRTAVLCTATLPALRPTMRAVVQQLEDAEPCKLVGIVISKDGS 390
+D ++ Y EE+ + VL+ +LCT LP LRP+MR VV++L+DA+PC + S+D +
Sbjct: 917 LDKQVLSTYIEESMIRVLKMGLLCTTKLPNLRPSMREVVRKLDDADPC----VSNSQDTT 972
Query: 389 GK 384
GK
Sbjct: 973 GK 974
>gb|AAC36318.1| leucine-rich receptor-like protein kinase [Malus x domestica]
Length = 999
Score = 46.6 bits (109), Expect = 2e-04
Identities = 21/43 (48%), Positives = 29/43 (66%)
Frame = -1
Query: 566 VDCRIPEMYKEEACMVLRTAVLCTATLPALRPTMRAVVQQLED 438
VD ++ YKEE C VL +LCT+ LP RP+MR VV+ L++
Sbjct: 926 VDPKLESCYKEEVCKVLNIGLLCTSPLPINRPSMRRVVKLLQE 968
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,592,311
Number of Sequences: 1393205
Number of extensions: 9349417
Number of successful extensions: 21261
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 20800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21258
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
