Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000010A_C02 KMC000010A_c02
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF27015.1|AC009177_5 hypothetical protein [Arabidopsis thali... 43 0.003
ref|NP_566246.1| expressed protein; protein id: At3g05090.1, sup... 43 0.003
ref|NP_085499.1| orf154 [Arabidopsis thaliana] gi|1785701|emb|CA... 31 8.6
>gb|AAF27015.1|AC009177_5 hypothetical protein [Arabidopsis thaliana]
Length = 743
Score = 42.7 bits (99), Expect = 0.003
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -2
Query: 547 TVRAYIWKKSDDLVLNYRVAQAR 479
TVRAY+WKK +DL+LNYRVA AR
Sbjct: 721 TVRAYVWKKPEDLILNYRVAIAR 743
>ref|NP_566246.1| expressed protein; protein id: At3g05090.1, supported by cDNA:
gi_15810506 [Arabidopsis thaliana]
gi|15810507|gb|AAL07141.1| unknown protein [Arabidopsis
thaliana] gi|22022579|gb|AAM83246.1| AT3g05090/T12H1_5
[Arabidopsis thaliana] gi|23296966|gb|AAN13212.1|
unknown protein [Arabidopsis thaliana]
gi|23308455|gb|AAN18197.1| At3g05090/T12H1_5
[Arabidopsis thaliana]
Length = 753
Score = 42.7 bits (99), Expect = 0.003
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -2
Query: 547 TVRAYIWKKSDDLVLNYRVAQAR 479
TVRAY+WKK +DL+LNYRVA AR
Sbjct: 731 TVRAYVWKKPEDLILNYRVAIAR 753
>ref|NP_085499.1| orf154 [Arabidopsis thaliana] gi|1785701|emb|CAA69775.1| orf154
[Arabidopsis thaliana]
Length = 154
Score = 31.2 bits (69), Expect = 8.6
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 21 QILLRKMSGRDANMPWSLENRISKARYLTHNSDLQC 128
Q LL K S R + P +L +R+ ++RY H+S ++C
Sbjct: 67 QALLAKQSFRIIHQPHTLLSRLLRSRYFPHSSMMEC 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,601,964
Number of Sequences: 1393205
Number of extensions: 9497690
Number of successful extensions: 20091
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20090
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
