Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000009A_C01 KMC000009A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_155589.1| hypothetical protein XP_155589 [Mus musculus] 37 0.21
emb|CAC83675.1| mucin 5 [Homo sapiens] 35 0.79
gb|EAA13230.1| ebiP3675 [Anopheles gambiae str. PEST] 35 1.0
gb|AAF35856.1| transitional protein 2 [Pan paniscus] 34 1.3
ref|NP_596957.1| similarity to HYPOTHETICAL ZINC FINGER PROTEIN ... 34 1.8
>ref|XP_155589.1| hypothetical protein XP_155589 [Mus musculus]
Length = 135
Score = 37.0 bits (84), Expect = 0.21
Identities = 18/48 (37%), Positives = 24/48 (49%), Gaps = 3/48 (6%)
Frame = +3
Query: 333 SNTSPQITGMPSRH---PPTGNISNHFAQWPVCHPHALLVHCHPRXCH 467
+NT P +T +PS H PPT ++ + C P L VH HP H
Sbjct: 8 NNTPPSLTLLPSLHAQCPPTPSVHPYLVSTHTCCPLTLSVHLHPVSVH 55
>emb|CAC83675.1| mucin 5 [Homo sapiens]
Length = 1349
Score = 35.0 bits (79), Expect = 0.79
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Frame = +3
Query: 192 STLENNPPSVPGTSPTSQKHKFHMLSSSSA-TSATNS*PLKANISCWHSNTSPQITGMPS 368
S+ + P + ++PT+ FH S++S TS+T+S P + S S+T+ PS
Sbjct: 837 SSTTSAPTASTISAPTTSTTSFHTTSTTSPPTSSTSSTPQTSKTSAATSSTTSGSGTTPS 896
Query: 369 RHPPTGNIS------NHFAQWPVCHPHALLVHCHPR 458
P T S +H + H + CHPR
Sbjct: 897 PVPTTSTASVSKTSTSHVSVSKTTHSQPVTRDCHPR 932
>gb|EAA13230.1| ebiP3675 [Anopheles gambiae str. PEST]
Length = 840
Score = 34.7 bits (78), Expect = 1.0
Identities = 21/73 (28%), Positives = 27/73 (36%)
Frame = +1
Query: 235 PHHKNTNFTCCHQAQPQVQQIHNHSKPTSAVGIPTHHLKSLACHLVILPRATFPTTLLSG 414
PHH + T Q Q Q HNH + S P HH S + P PT ++
Sbjct: 232 PHHTHQQQT---QQQQQQHSPHNHQQQQS----PQHHPSSSGSNASQTPARMTPTVIMGE 284
Query: 415 QCAIHMPFWCIAT 453
C + W T
Sbjct: 285 SCGVRTMVWSYDT 297
>gb|AAF35856.1| transitional protein 2 [Pan paniscus]
Length = 133
Score = 34.3 bits (77), Expect = 1.3
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = +3
Query: 243 QKHKFHMLSSSSATSATNS*PLKANISCWHSNTSPQITGMPSRHPPTGNISNHFAQWPVC 422
Q H+ SSS + A++ P A+ S H + SP + P RH T N S+H P
Sbjct: 39 QSHRGSRSRSSSQSPASHRNPTGAHSSSGHQSQSPNTSPPPKRHKKTMN-SHHSPMRPTL 97
Query: 423 H 425
H
Sbjct: 98 H 98
>ref|NP_596957.1| similarity to HYPOTHETICAL ZINC FINGER PROTEIN YKF9_YEAST
[Encephalitozoon cuniculi] gi|19171280|emb|CAD27005.1|
similarity to HYPOTHETICAL ZINC FINGER PROTEIN
YKF9_YEAST [Encephalitozoon cuniculi]
Length = 260
Score = 33.9 bits (76), Expect = 1.8
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +1
Query: 271 QAQPQVQQIHNHSKPTSAVGIPTHHLKSLACH-LVILPRATFPTTLLSGQCAIHMPFWCI 447
+AQPQVQ+ + + T AV LK +CH L+I P T L QC I M
Sbjct: 175 KAQPQVQEWKKYKQRTKAVAEIPDQLKCPSCHCLLINPMKTSCGHTLCDQC-IGM----- 228
Query: 448 ATLXCVTCTTVLPGF 492
C C+ V+ GF
Sbjct: 229 -DKKCYVCSRVIEGF 242
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 590,779,120
Number of Sequences: 1393205
Number of extensions: 13945936
Number of successful extensions: 38425
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38306
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
